tiny fix in docstring #864
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Build-test CI | |
| on: | |
| push: | |
| branches: [ master ] | |
| paths-ignore: | |
| - '**.md' | |
| - LICENSE.txt | |
| - NOTICE.txt | |
| - .mailmap | |
| - CITATION.cff | |
| pull_request: | |
| branches: [ master ] | |
| paths-ignore: | |
| - '**.md' | |
| - LICENSE.txt | |
| - NOTICE.txt | |
| - .mailmap | |
| - CITATION.cff | |
| jobs: | |
| build: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| include: | |
| # remove Ubuntu 20.04 until #1179 | |
| # - os: ubuntu-20.04 | |
| # compiler: gcc | |
| # compiler_version: 8 | |
| # DEVEL_BUILD: "OFF" | |
| # EXTRA_BUILD_FLAGS: "-DUSE_ITK=ON" | |
| # CMAKE_BUILD_TYPE: "Release" | |
| - os: ubuntu-latest | |
| compiler: gcc | |
| compiler_version: 9 | |
| DEVEL_BUILD: "OFF" | |
| EXTRA_BUILD_FLAGS: "-DUSE_ITK=ON" | |
| CMAKE_BUILD_TYPE: "Release" | |
| - os: ubuntu-latest | |
| compiler: gcc | |
| compiler_version: 9 | |
| DEVEL_BUILD: "ON" | |
| EXTRA_BUILD_FLAGS: "-DUSE_ITK=ON" | |
| CMAKE_BUILD_TYPE: "Release" | |
| # need to upgrade Gadgetron before we can enable gcc 10 | |
| #- os: ubuntu-latest | |
| # compiler: gcc | |
| # compiler_version: 10 | |
| # DEVEL_BUILD: "ON" | |
| # EXTRA_BUILD_FLAGS: "-DUSE_ITK=ON" | |
| # CMAKE_BUILD_TYPE: "Release" | |
| # let's run all of them, as opposed to aborting when one fails | |
| fail-fast: false | |
| steps: | |
| - uses: actions/checkout@v2 | |
| with: | |
| submodules: recursive | |
| - name: install_dependencies | |
| run: | |
| cd ${GITHUB_WORKSPACE}; | |
| git clone https://github.com/SyneRBI/SIRF-SuperBuild --recursive -b master; | |
| cd SIRF-SuperBuild/docker; | |
| sudo bash raw-ubuntu.sh; | |
| sudo bash build_essential-ubuntu.sh; | |
| sudo bash build_python-ubuntu.sh; | |
| sudo bash build_gadgetron-ubuntu.sh; | |
| sudo bash build_system-ubuntu.sh; | |
| PYTHON_EXECUTABLE=python3 PYTHON_INSTALL_DIR=~/virtualenv bash user_python-ubuntu.sh; | |
| - name: ccache | |
| uses: hendrikmuhs/ccache-action@v1 | |
| with: | |
| key: ${{ matrix.os }}-${{ matrix.CMAKE_BUILD_TYPE }}-${{ matrix.DEVEL_BUILD }} | |
| - name: set_compiler_variables | |
| shell: bash | |
| run: | | |
| set -ex | |
| if test 'XX${{ matrix.compiler }}' = 'XXclang'; then | |
| CC="clang" | |
| CXX="clang++" | |
| elif test 'XX${{ matrix.compiler }}' = 'XXgcc'; then | |
| CC="gcc" | |
| CXX="g++" | |
| fi | |
| if test 'XX${{ matrix.compiler_version }}' != 'XX'; then | |
| CC=${CC}-${{ matrix.compiler_version }} | |
| CXX=${CXX}-${{ matrix.compiler_version }} | |
| sudo apt install -yq ${CXX} ${CC} | |
| fi | |
| export CC CXX | |
| # make available to jobs below | |
| echo CC="$CC" >> $GITHUB_ENV | |
| echo CXX="$CXX" >> $GITHUB_ENV | |
| - name: configure | |
| shell: bash | |
| run: | | |
| set -ex; | |
| export PATH="/usr/lib/ccache:/usr/local/opt/ccache/libexec:$PATH" | |
| cmake --version | |
| #echo "cmake flags ${{ matrix.CMAKE_BUILD_TYPE }} ${{ matrix.EXTRA_BUILD_FLAGS }}" | |
| BUILD_FLAGS="-DCMAKE_BUILD_TYPE=${{ matrix.CMAKE_BUILD_TYPE }} -DUSE_SYSTEM_ACE=ON -DUSE_SYSTEM_Armadillo=ON -DUSE_SYSTEM_Boost=ON -DUSE_SYSTEM_FFTW3=ON -DUSE_SYSTEM_HDF5=ON -DBUILD_siemens_to_ismrmrd=ON -DUSE_SYSTEM_SWIG=ON -DCMAKE_INSTALL_PREFIX=~/install -DPYVER=3"; | |
| BUILD_FLAGS="$BUILD_FLAGS -DSIRF_SOURCE_DIR:PATH=${GITHUB_WORKSPACE} -DDISABLE_GIT_CHECKOUT_SIRF=ON" | |
| # only test SIRF (others are tested in the SIRF-SuperBuild action) | |
| BUILD_FLAGS="$BUILD_FLAGS -DBUILD_TESTING_GADGETRON=OFF -DBUILD_TESTING_ISMRMRD=OFF" | |
| DEVEL_BUILD="-DDEVEL_BUILD=${{ matrix.DEVEL_BUILD }}" | |
| mkdir -p build/; | |
| cd build; | |
| source ~/virtualenv/bin/activate; | |
| cmake -S ../SIRF-SuperBuild ${BUILD_FLAGS} ${{ matrix.EXTRA_BUILD_FLAGS }} ${DEVEL_BUILD}; | |
| - name: build | |
| shell: bash | |
| run: | |
| cd ${GITHUB_WORKSPACE}/build; | |
| source ~/virtualenv/bin/activate; | |
| source ~/install/bin/env_sirf.sh; | |
| cmake --build . -j 2; | |
| - name: tests | |
| shell: bash | |
| run: | |
| bash -v ${GITHUB_WORKSPACE}/SIRF-SuperBuild/docker/ctest_sirf.sh | |
| - name: Coverage | |
| shell: bash | |
| run: | | |
| pwd | |
| source ~/virtualenv/bin/activate | |
| coverage combine .coverage-* | |
| coverage report | |
| - name: Coveralls | |
| uses: AndreMiras/coveralls-python-action@develop | |
| with: | |
| parallel: true | |
| flag-name: python test | |
| debug: true | |
| coveralls_finish: | |
| needs: build | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Coveralls Finished | |
| uses: AndreMiras/coveralls-python-action@develop | |
| with: | |
| parallel-finished: true |