Merge pull request #540 from SysBioChalmers/fix-LDH

fix-bug: bug in GPR in #528
SysBioChalmers · Apr 24, 2023 · 17f67c0 · 17f67c0
2 parents 981b6fc + 1a44fc6
commit 17f67c0
Showing 1 changed file with 6 additions and 6 deletions.
diff --git a/model/Human-GEM.yml b/model/Human-GEM.yml
@@ -4,7 +4,7 @@
     short_name: "Human-GEM"
     full_name: "Generic genome-scale metabolic model of Homo sapiens"
     version: ""
-    date: "2023-04-17"
+    date: "2023-04-24"
     authors: "Jonathan Robinson, Hao Wang, Pierre-Etienne Cholley, Pinar Kocabas"
     email: "jonrob@chalmers.se"
     organization: "Chalmers University of Technology"
@@ -67728,11 +67728,11 @@
           - MAM02819x: -1
       - lower_bound: -1000
       - upper_bound: 1000
-      - gene_reaction_rule: "ENSG00000171989"
+      - gene_reaction_rule: "ENSG00000111716 or ENSG00000134333"
       - rxnNotes: ""
       - rxnFrom: "HMRdatabase"
       - eccodes: "1.1.1.27"
-      - references: "PMID:12042361;PMID:17045662;PMID:7449128;PMID:9927705"
+      - references: "PMID:12042361;PMID:17045662;PMID:7449128;PMID:9927705;PMID:25247702"
       - subsystem:
           - "Glycolysis / Gluconeogenesis"
       - confidence_score: 0
@@ -225103,7 +225103,7 @@
           - MAM03620c: 2
       - lower_bound: 0
       - upper_bound: 1000
-      - gene_reaction_rule: "(ENSG00000111716 and ENSG00000134333) or ENSG00000111716 or ENSG00000134333 or ENSG00000166796 or ENSG00000166800 or ENSG00000166816 or ENSG00000171989"
+      - gene_reaction_rule: "ENSG00000111716 or ENSG00000134333 or ENSG00000166796 or ENSG00000166800 or ENSG00000166816 or ENSG00000171989"
       - rxnNotes: ""
       - rxnFrom: "Recon3D"
       - eccodes: "1.1.1.27"
@@ -274940,7 +274940,7 @@
           - MAM03176c: 1
       - lower_bound: -1000
       - upper_bound: 1000
-      - gene_reaction_rule: "(ENSG00000111716 and ENSG00000134333) or ENSG00000111716 or ENSG00000134333 or ENSG00000166796 or ENSG00000166800 or ENSG00000171989"
+      - gene_reaction_rule: "ENSG00000111716 or ENSG00000134333 or ENSG00000166796 or ENSG00000166800 or ENSG00000166816 or ENSG00000171989"
       - rxnNotes: "https://www.springer.com/gp/book/9789400957800"
       - rxnFrom: "Recon3D"
       - eccodes: "1.1.1.27"
@@ -274990,7 +274990,7 @@
           - MAM03186c: 1
       - lower_bound: -1000
       - upper_bound: 1000
-      - gene_reaction_rule: "(ENSG00000111716 and ENSG00000134333) or ENSG00000111716 or ENSG00000134333 or ENSG00000166796 or ENSG00000166800 or ENSG00000171989"
+      - gene_reaction_rule: "ENSG00000111716 or ENSG00000134333 or ENSG00000166796 or ENSG00000166800 or ENSG00000166816 or ENSG00000171989"
       - rxnNotes: "https://www.springer.com/gp/book/9789400957800"
       - rxnFrom: "Recon3D"
       - eccodes: "1.1.1.27"