Skip to content

Commit

Permalink
feat: update compartment abbrevs in metabolic task files
Browse files Browse the repository at this point in the history
  • Loading branch information
@JonathanRob
JonathanRob committed Dec 18, 2021
1 parent 57bc7f6 commit e16451e
Show file tree
Hide file tree
Showing 4 changed files with 553 additions and 553 deletions.
102 changes: 51 additions & 51 deletions data/metabolicTasks/metabolicTasks_CellfieConsensus.txt
View file
Original file line number Diff line number Diff line change
Expand Up @@ -23,8 +23,8 @@
ADP[c] 2 2 ATP[c] 2 2
Pi[c] 2 2 NADH[c] 2 2
H2O[c] 2 2
7 Reactive oxygen species detoxification (H2O2 to H2O) H2O2[s] 2 2 H2O[s] 2 2
O2[s] 1 1
7 Reactive oxygen species detoxification (H2O2 to H2O) H2O2[e] 2 2 H2O[e] 2 2
O2[e] 1 1
8 Presence of the thioredoxin system through the thioredoxin reductase activity H+[c] 1 1 NADP+[c] 1 1
NADPH[c] 1 1 thioredoxin[c] 1 1
oxidized thioredoxin[c] 1 1
Expand Down Expand Up @@ -135,16 +135,16 @@
21 3'-Phospho-5'-adenylyl sulfate synthesis sulfate[c] 1 1 PAPS[c] 1 1
ATP[c] 2 2 ADP[c] 1 1
H+[c] 1 1 PPi[c] 1 1
22 Degradation of adenine to urate adenine[c] 1 1 urate[s] 1 1
22 Degradation of adenine to urate adenine[c] 1 1 urate[e] 1 1
H2O[c] 2 2 NH4+[c] 1 1
H+[c] 1 1 H2O2[s] 2 2
O2[s] 2 2 ribose-1-phosphate[c] 1 1
H+[c] 1 1 H2O2[e] 2 2
O2[e] 2 2 ribose-1-phosphate[c] 1 1
PRPP[c] 1 1 PPi[c] 1 1
H2O[s] 2 2
23 Degradation of guanine to urate guanine[c] 1 1 urate[s] 1 1
H2O[s] 1 1 NH4+[c] 1 1
H2O[c] 1 1 NADH[s] 1 1
NAD+[s] 1 1 H+[s] 0 1
H2O[e] 2 2
23 Degradation of guanine to urate guanine[c] 1 1 urate[e] 1 1
H2O[e] 1 1 NH4+[c] 1 1
H2O[c] 1 1 NADH[e] 1 1
NAD+[e] 1 1 H+[e] 0 1
24 Degradation of cytosine cytosine[c] 1 1 beta-alanine[c] 1 1
H2O[c] 3 3 CO2[c] 1 1
H+[c] 3 3 NH4+[c] 2 2
Expand Down Expand Up @@ -456,7 +456,7 @@
H+[c] 2 2
2-oxobutyrate[c] 1 1
NH4+[c] 1 1
82 Cysteine degradation cysteine[s] 1 1 H2O[c]
82 Cysteine degradation cysteine[e] 1 1 H2O[c]
O2[c] ATP[c]
Pi[c] CO2[c]
ADP[c] NH4+[c]
Expand Down Expand Up @@ -583,12 +583,12 @@
AKG[m] 1 1 H2O[m] 1 1
H+[m] 1 1 NADP+[m] 1 1
NADPH[m] 1 1
107 Conversion of lysine to L-2-Aminoadipate lysine[s] 1 1 L-2-aminoadipate[c] 1 1
H2O[s] 2 2 H2O2[s] 2 2
O2[s] 2 2 NH4+[s] 1 1
NADH[s] 1 1 H+[c] 1 1
NAD+[c] 1 1 NAD+[s] 1 1
H+[s] 0 1 NADH[c] 1 1
107 Conversion of lysine to L-2-Aminoadipate lysine[e] 1 1 L-2-aminoadipate[c] 1 1
H2O[e] 2 2 H2O2[e] 2 2
O2[e] 2 2 NH4+[e] 1 1
NADH[e] 1 1 H+[c] 1 1
NAD+[c] 1 1 NAD+[e] 1 1
H+[e] 0 1 NADH[c] 1 1
108 Methionine degradation methionine[c] 1 1 cysteine[c] 1 1
serine[c] 1 2 propanoyl-CoA[c] 1 1
ATP[c] 2 2 ATP[m] 1 1
Expand Down Expand Up @@ -996,70 +996,70 @@
CoA[c] 1 1 PPi[c] 4 4
HCO3-[c] 7 7 H+[m] 8
H+[c] 8
167 Taurochenodeoxycholate synthesis cholesterol[r] 1 1 taurochenodeoxycholate[s] 1 1
taurine[s] 1 1 propanoyl-CoA[s] 1 1
CoA[s] 1 1 AMP[s] 1 1
ATP[s] 1 1 PPi[s] 1 1
167 Taurochenodeoxycholate synthesis cholesterol[r] 1 1 taurochenodeoxycholate[e] 1 1
taurine[e] 1 1 propanoyl-CoA[e] 1 1
CoA[e] 1 1 AMP[e] 1 1
ATP[e] 1 1 PPi[e] 1 1
O2[r] 1 1 NADP+[m] 3 3
O2[s] 1 1 NADP+[r] 1 1
O2[e] 1 1 NADP+[r] 1 1
O2[m] 3 3 NADH[r] 1 1
NAD+[r] 1 1 NADP+[c] 1 1
H+[c] 2 2 NAD+[c] 1 1
H+[m] 2 2 H2O[m] 3 3
NADH[c] 1 1 H2O[r] 1 1
NADPH[c] 1 1 H2O[s] 1 1
NADPH[c] 1 1 H2O[e] 1 1
NADPH[m] 3 3
NADPH[r] 1 1
168 Glycochenodeoxycholate synthesis cholesterol[r] 1 1 glycochenodeoxycholate[s] 1 1
glycine[s] 1 1 propanoyl-CoA[s] 1 1
ATP[s] 1 1 AMP[s] 1 1
FADH2[s] 1 1 PPi[s] 1 1
CoA[s] 1 1 FAD[s] 1 1
168 Glycochenodeoxycholate synthesis cholesterol[r] 1 1 glycochenodeoxycholate[e] 1 1
glycine[e] 1 1 propanoyl-CoA[e] 1 1
ATP[e] 1 1 AMP[e] 1 1
FADH2[e] 1 1 PPi[e] 1 1
CoA[e] 1 1 FAD[e] 1 1
NADPH[r] 1 1 H2O[r] 1 1
NADPH[c] 1 1 H2O[s] 3 3
NADPH[c] 1 1 H2O[e] 3 3
NADPH[m] 3 3 H2O[m] 5 5
NADPH[s] 1 1 NADP+[r] 1 1
NAD+[r] 1 1 NADP+[s] 1 1
NADPH[e] 1 1 NADP+[r] 1 1
NAD+[r] 1 1 NADP+[e] 1 1
NADH[c] 1 1 NADP+[c] 1 1
H+[m] 2 2 NADP+[m] 3 3
H+[s] 1 1 NADH[r] 1 1
H+[e] 1 1 NADH[r] 1 1
H+[c] 2 2 NAD+[c] 1 1
O2[m] 3 3
O2[r] 1 1
O2[s] 2 2
169 tauro-cholate synthesis cholesterol[r] 1 1 taurocholate[s] 1 1
taurine[s] 1 1 propanoyl-CoA[s] 1 1
CoA[s] 1 1 AMP[s] 1 1
ATP[s] 1 1 PPi[s] 1 1
FADH2[s] 1 1 FAD[s] 1 1
O2[e] 2 2
169 tauro-cholate synthesis cholesterol[r] 1 1 taurocholate[e] 1 1
taurine[e] 1 1 propanoyl-CoA[e] 1 1
CoA[e] 1 1 AMP[e] 1 1
ATP[e] 1 1 PPi[e] 1 1
FADH2[e] 1 1 FAD[e] 1 1
NADPH[r] 1 4 NADPH[m] 1 2
NADPH[s] 1 1 NADP+[r] 1 1
NADPH[e] 1 1 NADP+[r] 1 1
NADPH[m] 0 2 NADP+[c] 1 2
NADPH[c] 0 1 NADP+[m] 2 2
NADH[c] 1 1 NADP+[s] 1 1
NADH[c] 1 1 NADP+[e] 1 1
NADP+[m] 0 1 NAD+[c] 1 1
O2[r] 2 2 H2O[m] 2 2
O2[m] 2 2 H2O[r] 2 2
O2[s] 2 2 H2O[s] 3 3
O2[e] 2 2 H2O[e] 3 3
H+[r] 1 1
H+[c] 2 2
H+[s] 1 1
170 glyco-cholate synthesis cholesterol[r] 1 1 glycocholate[s] 1 1
glycine[s] 1 1 propanoyl-CoA[s] 1 1
ATP[s] 1 1 AMP[s] 1 1
FADH2[s] 1 1 PPi[s] 1 1
CoA[s] 1 1 FAD[s] 1 1
H+[e] 1 1
170 glyco-cholate synthesis cholesterol[r] 1 1 glycocholate[e] 1 1
glycine[e] 1 1 propanoyl-CoA[e] 1 1
ATP[e] 1 1 AMP[e] 1 1
FADH2[e] 1 1 PPi[e] 1 1
CoA[e] 1 1 FAD[e] 1 1
NADPH[r] 1 1 NADP+[m] 1 1
NADPH[s] 1 1 NADP+[r] 1 1
NADPH[e] 1 1 NADP+[r] 1 1
NADPH[m] 1 1 NADP+[c] 1 1
NADPH[c] 1 1 NADP+[s] 1 1
NADPH[c] 1 1 NADP+[e] 1 1
NADH[c] 1 1 NAD+[c] 1 1
H+[r] 1 1 H2O[m] 2 2
H+[s] 1 1 H2O[s] 3 3
H+[e] 1 1 H2O[e] 3 3
H+[c] 2 2 H2O[r] 2 2
O2[r] 2 2
O2[m] 2 2
O2[s] 2 2
O2[e] 2 2
171 Synthesis of thromboxane from arachidonate arachidonate[r] 1 1 thromboxane A2[r] 1 1
O2[r] 2 2 H2O[r] 1 1
NADPH[r] 1 1 NADP+[r] 1 1
Expand Down
Loading

0 comments on commit e16451e

Please sign in to comment.