Human 1.15

.all-contributorsrc

@@ -20,6 +20,7 @@
         "doc",
         "ideas",
         "infra",
+        "maintenance",
         "platform",
         "projectManagement",
         "question",
@@ -41,6 +42,7 @@
         "doc",
         "ideas",
         "infra",
+        "maintenance",
         "platform",
         "projectManagement",
         "question",
@@ -74,6 +76,7 @@
         "bug",
         "code",
         "content",
+        "research",
         "review"
       ]
     },
@@ -83,7 +86,9 @@
       "avatar_url": "https://avatars.githubusercontent.com/u/32029599?v=4",
       "profile": "",
       "contributions": [
-        "bug"
+        "bug",
+        "research",
+        "review"
       ]
     },
     {
@@ -92,7 +97,9 @@
       "avatar_url": "https://avatars.githubusercontent.com/u/8766764?v=4",
       "profile": "",
       "contributions": [
-        "bug"
+        "bug",
+        "research",
+        "code"
       ]
     },
     {
@@ -121,7 +128,8 @@
       "contributions": [
         "bug",
         "content",
-        "code"
+        "code",
+        "research"
       ]
     },
     {
@@ -187,7 +195,8 @@
       "contributions": [
         "bug",
         "content",
-        "code"
+        "code",
+        "research"
       ]
     },
     {
@@ -196,7 +205,8 @@
       "avatar_url": "https://avatars.githubusercontent.com/u/3072880?v=4",
       "profile": "https://orcid.org/0000-0003-3947-488X",
       "contributions": [
-        "bug"
+        "bug",
+        "research"
       ]
     },
     {
@@ -205,7 +215,8 @@
       "avatar_url": "https://avatars.githubusercontent.com/u/45748199?v=4",
       "profile": "https://github.com/mpagni12",
       "contributions": [
-        "bug"
+        "bug",
+        "research"
       ]
     },
     {
@@ -215,7 +226,8 @@
       "profile": "https://github.com/ANiknejad",
       "contributions": [
         "bug",
-        "content"
+        "content",
+        "research"
       ]
     },
     {
@@ -224,7 +236,8 @@
       "avatar_url": "https://avatars.githubusercontent.com/u/62765618?v=4",
       "profile": "https://github.com/CadavidJoseL",
       "contributions": [
-        "bug"
+        "bug",
+        "research"
       ]
     },
     {
@@ -234,7 +247,8 @@
       "profile": "https://github.com/johan-gson",
       "contributions": [
         "bug",
-        "content"
+        "content",
+        "research"
       ]
     },
     {
@@ -252,7 +266,8 @@
       "avatar_url": "https://avatars.githubusercontent.com/u/22166601?v=4",
       "profile": "https://github.com/Rasools",
       "contributions": [
-        "ideas"
+        "ideas",
+        "research"
       ]
     },
     {
@@ -261,7 +276,8 @@
       "avatar_url": "https://avatars.githubusercontent.com/u/6586371?v=4",
       "profile": "https://github.com/stairs",
       "contributions": [
-        "bug"
+        "bug",
+        "content"
       ]
     },
     {
@@ -273,8 +289,43 @@
         "bug",
         "code",
         "data",
+        "doc",
+        "ideas",
+        "infra",
+        "maintenance",
+        "platform",
         "projectManagement",
-        "research"
+        "research",
+        "review"
+      ]
+    },
+    {
+      "login": "Devlin-Moyer",
+      "name": "Devlin Moyer",
+      "avatar_url": "https://avatars.githubusercontent.com/u/33460176?v=4",
+      "profile": "https://orcid.org/0000-0002-6997-9531",
+      "contributions": [
+        "bug",
+        "research",
+        "review"
+      ]
+    },
+    {
+      "login": "manas-kohli",
+      "name": "manas-kohli",
+      "avatar_url": "https://avatars.githubusercontent.com/u/5028979?v=4",
+      "profile": "https://github.com/manas-kohli",
+      "contributions": [
+        "bug"
+      ]
+    },
+    {
+      "login": "juliette-cooke",
+      "name": "Juliette",
+      "avatar_url": "https://avatars.githubusercontent.com/u/90753730?v=4",
+      "profile": "https://github.com/juliette-cooke",
+      "contributions": [
+        "bug"
       ]
     }
   ],

.github/workflows/yaml-validation.yml

@@ -5,28 +5,25 @@ on: [push, pull_request]
 jobs:
   yaml-validation:
     runs-on: ubuntu-latest
+    container:
+      image: ghcr.io/metabolicatlas/memote-docker:0.13
+      volumes:
+        - ${{ github.workspace }}:/project:rw
+      options: --user root --workdir /project
 
     steps:
+      - name: Checkout
+        uses: actions/checkout@v3
 
-    - name: Checkout
-      uses: actions/checkout@v2
+      - name: YAML Lint
+        uses: ibiqlik/action-yamllint@v1.0.0
+        with:
+          ## File(s) or Directory, separate by space if multiple files or folder are specified
+          file_or_dir: model/
+          ## Custom configuration (as YAML source)
+          config_data: "{extends: default, rules: {line-length: disable}}"
+          ## Return non-zero exit code on warnings as well as errors
+          # strict: # optional, default is false
 
-    - name: YAML Lint
-      uses: ibiqlik/action-yamllint@v1.0.0
-      with:
-        ## File(s) or Directory, separate by space if multiple files or folder are specified
-        file_or_dir: model/
-        ## Custom configuration (as YAML source)
-        config_data: "{extends: default, rules: {line-length: disable}}"
-        ## Return non-zero exit code on warnings as well as errors
-        # strict: # optional, default is false
-
-    - name: Test import with cobrapy and consistency with annotation files
-      uses: addnab/docker-run-action@v3
-      with:
-        image: opencobra/memote:latest
-        options: -v ${{ github.workspace }}:/opt
-        shell: bash
-        run: |
-          cd /opt
-          python code/test/sanityCheck.py
+      - name: Test import with cobrapy and consistency with annotation files
+        run: python code/test/sanityCheck.py

.gitignore

@@ -20,4 +20,8 @@ Thumbs.db
 *.exe.*
 
 # Windows dynamic library files
-*.dll
+*.dll
+
+yarn.lock
+package.json
+node_modules/