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chore: generate new models
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# Conflicts:
#	README.md
#	model/boundaryMets.txt
#	model/yeast-GEM.txt
#	model/yeast-GEM.xml
#	model/yeast-GEM.yml
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edkerk committed Mar 13, 2022
1 parent dc77a27 commit 031c9ce
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4 changes: 2 additions & 2 deletions README.md
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Expand Up @@ -33,9 +33,9 @@ This repository contains the current consensus genome-scale metabolic model of _

|Taxonomy | Template model | Reactions | Metabolites| Genes |
|:-------:|:--------------:|:---------:|:----------:|:-----:|
|_Saccharomyces cerevisiae_|[Yeast 7.6](https://sourceforge.net/projects/yeast/)|4058|2742|1150|
|_Saccharomyces cerevisiae_|[Yeast 7.6](https://sourceforge.net/projects/yeast/)|4070|2752|1152|

**Last update:** 2021-12-17
**Last update:** 2022-03-13

## Installation

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3 changes: 3 additions & 0 deletions model/boundaryMets.txt
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Expand Up @@ -259,3 +259,6 @@ s_4255 tyrosyl acetate
s_4257 methionyl acetate
s_4259 propyl acetate
s_4262 ethyl propionate
s_4263 hydrogen sulfide
s_4269 alkanesulfonate
s_4271 taurocholate
12 changes: 12 additions & 0 deletions model/yeast-GEM.txt
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Expand Up @@ -4057,3 +4057,15 @@ r_4695 s_4259 -> 0.00 1000.00 0.00
r_4697 s_4253 <=> s_4261 -1000.00 1000.00 0.00
r_4698 s_4261 -> s_4262 0.00 1000.00 0.00
r_4699 s_4262 -> 0.00 1000.00 0.00
r_4700 s_0841 -> s_4263 YIL166C 0.00 1000.00 0.00
r_4701 s_0807 + s_3785 <=> s_0421 + s_1401 + s_3906 YFR055W -1000.00 1000.00 0.00
r_4702 s_0434 + s_4264 <=> s_0633 + s_4265 -1000.00 1000.00 0.00
r_4703 s_0180 + s_0981 <=> s_0991 + s_4267 -1000.00 1000.00 0.00
r_4704 s_4264 + s_4267 <=> s_1399 + s_4266 YOR251C -1000.00 1000.00 0.00
r_4705 s_4269 -> s_4268 YIL166C 0.00 1000.00 0.00
r_4706 s_4271 -> s_4270 YIL166C 0.00 1000.00 0.00
r_4707 s_0180 + s_1275 + s_4268 <=> s_0417 + s_0456 + s_1458 + s_1469 YLL057C -1000.00 1000.00 0.00
r_4708 s_0803 + s_4272 <=> s_1467 + s_4113 -1000.00 1000.00 0.00
r_4709 s_4263 -> 0.00 1000.00 0.00
r_4710 s_4269 -> 0.00 1000.00 0.00
r_4711 s_4271 -> 0.00 1000.00 0.00
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