chore: new version

SysBioChalmers · Jun 10, 2018 · 8ee2160 · 8ee2160
1 parent ae45868
commit 8ee2160
Show file tree

Hide file tree

Showing 5 changed files with 9 additions and 3 deletions.
diff --git a/ModelFiles/mat/yeastGEM.mat b/ModelFiles/mat/yeastGEM.mat
diff --git a/ModelFiles/xlsx/yeastGEM.xlsx b/ModelFiles/xlsx/yeastGEM.xlsx
diff --git a/ModelFiles/xml/yeastGEM.xml b/ModelFiles/xml/yeastGEM.xml
@@ -1,6 +1,6 @@
 <?xml version="1.0" encoding="UTF-8"?>
 <sbml xmlns="http://www.sbml.org/sbml/level3/version1/core" xmlns:fbc="http://www.sbml.org/sbml/level3/version1/fbc/version2" xmlns:groups="http://www.sbml.org/sbml/level3/version1/groups/version1" level="3" version="1" fbc:required="false" groups:required="false">
-  <model metaid="yeastGEM_v8.1.0" id="COBRAModel" name="Model Exported from COBRA Toolbox" fbc:strict="true">
+  <model metaid="yeastGEM_v8.1.1" id="COBRAModel" name="Model Exported from COBRA Toolbox" fbc:strict="true">
     <listOfUnitDefinitions>
       <unitDefinition id="mmol_per_gDW_per_hr">
         <listOfUnits>

diff --git a/history.md b/history.md
@@ -1,5 +1,12 @@
 # History
 
+### yeast 8.1.1:
+* Fixes:
+  * Fixes #96: regardless if the model is saved with a windows or a MAC machine, the `.xml` file is now stored with the same scientific format.
+  * Fixes #108: No CHEBI or KEGG ids are now shared by different metabolites. Also, updated the metabolites that were skipped in the previous manual curation (PR #74).
+  * Remade function for defining confidence scores, which fixed 38 scores in `rxnConfidenceScores` (most of them from pseudoreactions).
+  * `loadYeastModel` and `saveYeastModel` were improved to allow their use also when outside of the actual folder.
+
 ### yeast 8.1.0:
 * New features:
   * SLIME reactions added to the model using [SLIMEr](https://github.com/SysBioChalmers/SLIMEr), to properly account for constraints on lipid metabolism (fixes #21):
@@ -64,7 +71,6 @@ First version of the yeast8 model, to separate it from previous versions:
 
 ### yeast 7.8.0:
 First release of the yeast model
-
 * Format changes:
   * FBCv2 compliant
   * Compatible with latest COBRA and RAVEN parsers

diff --git a/version.txt b/version.txt
@@ -1 +1 @@
-8.1.0
+8.1.1