This repository contains python scripts and a R package for analysing datasets generated using the Record-seq workflow described at https://www.nature.com/articles/s41586-018-0569-1
Download the scripts within the primary-analysis directory and save the spacerExtractor.py and SErmdup.py scripts in your preferred scripts directory. Create a dedicated directory for the analysis of your experiment at your preferred path - by either typing $ mkdir experimentDirectory in a bash session or using your UI. Download and save the Snakefile and config.yml file within this directory.
Further, from within a session of R (using RStudio or an R session within bash ), download the recoRdseq R package using:
> install.packages("devtools")
> library(devtools)
> install_github("plattlab/Transcriptional-Recording", subdir="recoRdseq")
This repository is licensed under the Apache License Version 2.0
- Tanmay Tanna - (https://github.com/TanmayTanna)