Merge pull request #68 from Tokazama/similar

Reduce similar ambiguities

.github/workflows/ci.yml

@@ -1,12 +1,7 @@
 name: CI
 on:
-  pull_request:
-    branches:
-      - master
-  push:
-    branches:
-      - master
-    tags: '*'
+  - push
+  - pull_request
 jobs:
   test:
     name: Julia ${{ matrix.version }} - ${{ matrix.os }} - ${{ matrix.arch }} - ${{ github.event_name }}
@@ -15,30 +10,55 @@ jobs:
       fail-fast: false
       matrix:
         version:
-          - '1' # Leave this line unchanged. '1' will automatically expand to the latest stable 1.x release of Julia.
+          - '1'
           - 'nightly'
         os:
           - ubuntu-latest
+          - macOS-latest
+          - windows-latest
         arch:
           - x64
+    steps:
+      - uses: actions/checkout@v2
+      - uses: julia-actions/setup-julia@v1
+        with:
+          version: ${{ matrix.version }}
+          arch: ${{ matrix.arch }}
+      - uses: actions/cache@v1
+        env:
+          cache-name: cache-artifacts
+        with:
+          path: ~/.julia/artifacts
+          key: ${{ runner.os }}-test-${{ env.cache-name }}-${{ hashFiles('**/Project.toml') }}
+          restore-keys: |
+            ${{ runner.os }}-test-${{ env.cache-name }}-
+            ${{ runner.os }}-test-
+            ${{ runner.os }}-
+      - uses: julia-actions/julia-buildpkg@v1
+      - uses: julia-actions/julia-runtest@v1
+      - uses: julia-actions/julia-processcoverage@v1
+      - uses: codecov/codecov-action@v1
+        with:
+          file: lcov.info
   docs:
     name: Documentation
     runs-on: ubuntu-latest
     steps:
       - uses: actions/checkout@v2
       - uses: julia-actions/setup-julia@v1
         with:
-          version: '1'
+          version: '1.6'
       - run: |
-          git config --global user.name name
-          git config --global user.email email
-          git config --global github.user username
+          julia --project=docs -e '
+            using Pkg
+            Pkg.develop(PackageSpec(path=pwd()))
+            Pkg.instantiate()'
       - run: |
           julia --project=docs -e '
-            using Pkg;
-            Pkg.develop(PackageSpec(path=pwd()));
-            Pkg.instantiate();
-            include("docs/make.jl");'
+            using Documenter: doctest
+            using AxisIndices
+            doctest(AxisIndices)'
+      - run: julia --project=docs docs/make.jl
         env:
           GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
-          DOCUMENTER_KEY: ${{ secrets.DOCUMENTER_KEY }}
+          DOCUMENTER_KEY: ${{ secrets.DOCUMENTER_KEY }}

Project.toml

@@ -1,7 +1,7 @@
 name = "AxisIndices"
 uuid = "f52c9ee2-1b1c-4fd8-8546-6350938c7f11"
 authors = ["Tokazama <zchristensen7@gmail.com>"]
-version = "0.7.1"
+version = "0.7.2"
 
 [deps]
 AbstractFFTs = "621f4979-c628-5d54-868e-fcf4e3e8185c"

README.md

@@ -39,7 +39,7 @@ When using functions as indexing arguments, the axis corresponding to each argum
 
 ```julia
 julia> ax[:, >(2)]
-2×2 AxisArray(::Array{Int64,2}
+2×2 AxisArray(::Matrix{Int64}
   • axes:
      1 = 1:2
      2 = 1:2
@@ -65,7 +65,7 @@ julia> inds_before = firstindex(axis):(not_index - 1);  # all of the indices bef
 julia> inds_after = (not_index + 1):lastindex(axis);    # all of the indices after `not_index`
 
 julia> x[:, vcat(inds_before, inds_after)]
-2×3 Array{Int64,2}:
+2×3 Matrix{Int64}:
  1  5  7
  2  6  8
 
@@ -74,7 +74,7 @@ julia> x[:, vcat(inds_before, inds_after)]
 Using an `AxisArray`, this only requires one line of code
 ```julia
 julia> ax[:, !=(2)]
-2×3 AxisArray(::Array{Int64,2}
+2×3 AxisArray(::Matrix{Int64}
   • axes:
      1 = 1:2
      2 = 1:3
@@ -89,7 +89,7 @@ We can using `ChainedFixes` to combine multiple functions.
 julia> using ChainedFixes
 
 julia> ax[:, or(<(2), >(3))]  # == ax[:, [1, 4]]
-2×2 AxisArray(::Array{Int64,2}
+2×2 AxisArray(::Matrix{Int64}
   • axes:
      1 = 1:2
      2 = 1:2
@@ -99,7 +99,7 @@ julia> ax[:, or(<(2), >(3))]  # == ax[:, [1, 4]]
   2  2  8  
 
 julia> ax[:, and(>(1), <(4))]
-2×2 AxisArray(::Array{Int64,2}
+2×2 AxisArray(::Matrix{Int64}
   • axes:
      1 = 1:2
      2 = 1:2
@@ -136,7 +136,7 @@ julia> ax = AxisArray(x, nothing, (.1:.1:.4)s)
 We can still use functions to access these elements
 ```julia
 julia> ax[:, <(0.3s)]
-2×2 AxisArray(::Array{Int64,2}
+2×2 AxisArray(::Matrix{Int64}
   • axes:
      1 = 1:2
      2 = (0.1:0.1:0.2) s
@@ -155,7 +155,7 @@ julia> ax[1, 0.1s]
 ...or as intervals.
 ```julia
 julia> ax[:, 0.1s..0.3s]
-2×3 AxisArray(::Array{Int64,2}
+2×3 AxisArray(::Matrix{Int64}
   • axes:
      1 = 1:2
      2 = (0.1:0.1:0.3) s
@@ -182,7 +182,7 @@ julia> ax = AxisArray(x, 2:3, 2:5)
   3  2  4  6  8  
 
 julia> ax[:,2]
-2-element AxisArray(::Array{Int64,1}
+2-element AxisArray(::Vector{Int64}
   • axes:
      1 = 2:3
 )
@@ -259,7 +259,7 @@ julia> ArrayInterface.known_length(typeof(ax)) # size is known at compile time
 julia> ax[1:2, 1:2] .= x[1:2, 1:2];  # underlying type is mutable `Array`, so we can assign new values
 
 julia> ax
-2×2 AxisArray(::Array{Int64,2}
+2×2 AxisArray(::Matrix{Int64}
   • axes:
      1 = 1:2
      2 = 1:2
@@ -274,7 +274,7 @@ julia> ax
 
 If each element along a particular axis corresponds to a field of a type then we can encode that information in the axis.
 ```julia
-julia> ax = AxisArray(reshape(1:4, 2, 2), StructAxis{Complex{Float64}}(), [:a, :b])
+julia> ax = AxisArray(reshape(1:4, 2, 2), StructAxis{ComplexF64}(), [:a, :b])
 2×2 AxisArray(reshape(::UnitRange{Int64}, 2, 2)
   • axes:
      1 = [:re, :im]
@@ -289,7 +289,7 @@ julia> ax = AxisArray(reshape(1:4, 2, 2), StructAxis{Complex{Float64}}(), [:a, :
 We can then create a lazy mapping of that type across views of the array.
 ```julia
 julia> axview = struct_view(ax)
-2-element AxisArray(mappedarray(Complex{Float64}, view(reshape(::UnitRange{Int64}, 2, 2), 1, :), view(reshape(::UnitRange{Int64}, 2, 2), 2, :))
+2-element AxisArray(mappedarray(ComplexF64, view(reshape(::UnitRange{Int64}, 2, 2), 1, :), view(reshape(::UnitRange{Int64}, 2, 2), 2, :))
   • axes:
      1 = [:a, :b]
 )
@@ -313,7 +313,7 @@ julia> mx = attach_metadata(AxisArray(x))
   • axes:
      1 = 1:2
      2 = 1:4
-), ::Dict{Symbol,Any}
+), ::Dict{Symbol, Any}
   • metadata:
 )
      1  2  3  4
@@ -345,7 +345,7 @@ We can also pad axes in various ways.
 julia> x = [:a, :b, :c, :d];
 
 julia> AxisArray(x, circular_pad(first_pad=2, last_pad=2))
-8-element AxisArray(::Array{Symbol,1}
+8-element AxisArray(::Vector{Symbol}
   • axes:
      1 = -1:6
 )
@@ -360,7 +360,7 @@ julia> AxisArray(x, circular_pad(first_pad=2, last_pad=2))
   6    :b  
 
 julia> AxisArray(x, replicate_pad(first_pad=2, last_pad=2))
-8-element AxisArray(::Array{Symbol,1}
+8-element AxisArray(::Vector{Symbol}
   • axes:
      1 = -1:6
 )
@@ -375,7 +375,7 @@ julia> AxisArray(x, replicate_pad(first_pad=2, last_pad=2))
   6    :d  
 
 julia> AxisArray(x, symmetric_pad(first_pad=2, last_pad=2))
-8-element AxisArray(::Array{Symbol,1}
+8-element AxisArray(::Vector{Symbol}
   • axes:
      1 = -1:6
 )
@@ -390,7 +390,7 @@ julia> AxisArray(x, symmetric_pad(first_pad=2, last_pad=2))
   6    :b  
 
 julia> AxisArray(x, reflect_pad(first_pad=2, last_pad=2))
-8-element AxisArray(::Array{Symbol,1}
+8-element AxisArray(::Vector{Symbol}
   • axes:
      1 = -1:6
 )

docs/src/index.md

@@ -129,7 +129,7 @@ julia> x[:one] == y["one"] == z[Second(1)]
 true
 
 julia> x[[:one, :two]]
-2-element AxisArray(::Array{Int64,1}
+2-element AxisArray(::Vector{Int64}
   • axes:
      1 = [:one, :two]
 )
@@ -190,7 +190,7 @@ Axis((1.5:0.5:2.0) s => SimpleAxis(2:3))
 However, we can't ensure that the resulting range will have a step of one in other cases so only the indices are returned.
 ```jldoctest indexing_examples
 julia> time1[1:2:3]
-2-element AxisArray(::StepRange{Int64,Int64}
+2-element AxisArray(::StepRange{Int64, Int64}
   • axes:
      1 = (1.5:1.0:2.5) s
 )
@@ -199,9 +199,9 @@ julia> time1[1:2:3]
   2.5 s  3
 
 julia> time1[[1, 2, 3]]
-3-element AxisArray(::Array{Int64,1}
+3-element AxisArray(::Vector{Int64}
   • axes:
-     1 = Unitful.Quantity{Float64,𝐓,Unitful.FreeUnits{(s,),𝐓,nothing}}[1.5 s, 2.0 s, 2.5 s]
+     1 = Unitful.Quantity{Float64, 𝐓, Unitful.FreeUnits{(s,), 𝐓, nothing}}[1.5 s, 2.0 s, 2.5 s]
 )
          1
   1.5 s  1
@@ -294,7 +294,7 @@ julia> using AxisIndices
 julia> A_base = [1 2; 3 4];
 
 julia> A_axis = AxisArray(A_base, ["a", "b"], [:one, :two])
-2×2 AxisArray(::Array{Int64,2}
+2×2 AxisArray(::Matrix{Int64}
   • axes:
      1 = ["a", "b"]
      2 = [:one, :two]
@@ -319,7 +319,7 @@ julia> A_axis = AxisArray{Int}(undef, ["a", "b"], [:one, :two]);
 julia> A_axis[:,:] = A_base;
 
 julia> A_axis
-2×2 AxisArray(::Array{Int64,2}
+2×2 AxisArray(::Matrix{Int64}
   • axes:
      1 = ["a", "b"]
      2 = [:one, :two]
@@ -335,11 +335,11 @@ We can also attach metadata to an array.
 julia> using Metadata
 
 julia> attach_metadata(AxisArray(A_base, (["a", "b"], [:one, :two])), (m1 = 1, m2 = 2))
-2×2 attach_metadata(AxisArray(::Array{Int64,2}
+2×2 attach_metadata(AxisArray(::Matrix{Int64}
   • axes:
      1 = ["a", "b"]
      2 = [:one, :two]
-), ::NamedTuple{(:m1, :m2),Tuple{Int64,Int64}}
+), ::NamedTuple{(:m1, :m2), Tuple{Int64, Int64}}
   • metadata:
      m1 = 1
      m2 = 2
@@ -349,11 +349,11 @@ julia> attach_metadata(AxisArray(A_base, (["a", "b"], [:one, :two])), (m1 = 1, m
   "b"  3      4
 
 julia> attach_metadata(NamedAxisArray{(:xdim, :ydim)}(A_base, ["a", "b"], [:one, :two]), (m1 = 1, m2 = 2))
-2×2 NamedDimsArray(attach_metadata(AxisArray(::Array{Int64,2}
+2×2 NamedDimsArray(attach_metadata(AxisArray(::Matrix{Int64}
   • axes:
      xdim = ["a", "b"]
      ydim = [:one, :two]
-), ::NamedTuple{(:m1, :m2),Tuple{Int64,Int64}}
+), ::NamedTuple{(:m1, :m2), Tuple{Int64, Int64}}
   • metadata:
      m1 = 1
      m2 = 2
@@ -372,7 +372,7 @@ offset by 4 and the last indices are centered.
 
 ```jldoctest indexing_examples
 julia> AxisArray(ones(3,3), offset(4), center)
-3×3 AxisArray(::Array{Float64,2}
+3×3 AxisArray(::Matrix{Float64}
   • axes:
      1 = 5:7
      2 = -1:1

src/AxisIndices.jl

@@ -70,25 +70,6 @@ export
 
 const ArrayInitializer = Union{UndefInitializer, Missing, Nothing}
 
-# Val wraps the number of axes to retain
-naxes(A::AbstractArray, v::Val) = naxes(axes(A), v)
-naxes(axs::Tuple, v::Val{N}) where {N} = _naxes(axs, N)
-@inline function _naxes(axs::Tuple, i::Int)
-    if i === 0
-        return ()
-    else
-        return (first(axs), _naxes(tail(axs), i - 1)...)
-    end
-end
-
-@inline function _naxes(axs::Tuple{}, i::Int)
-    if i === 0
-        return ()
-    else
-        return (SimpleAxis(1), _naxes((), i - 1)...)
-    end
-end
-
 include("errors.jl")
 include("abstract_axis.jl")
 include("axis_array.jl")
@@ -137,15 +118,8 @@ include("centered_axis.jl")
 include("identity_axis.jl")
 include("padded_axis.jl")
 include("struct_axis.jl")
-
-# TODO assign_indices tests
-function assign_indices(axis, inds)
-    if can_change_size(axis) && !((known_length(inds) === nothing) || known_length(inds) === known_length(axis))
-        return unsafe_reconstruct(axis, inds)
-    else
-        return axis
-    end
-end
+include("similar.jl")
+include("utils.jl")
 
 """
     is_key([collection,] arg) -> Bool

src/abstract_axis.jl

@@ -20,7 +20,6 @@ and [`IdentityAxis`](@ref) for more details and examples.
 """
 abstract type AbstractOffsetAxis{I,Inds,F} <: AbstractAxis{I,Inds} end
 
-
 """
     IndexAxis
 
@@ -160,7 +159,7 @@ ArrayInterface.known_first(::Type{T}) where {T<:AbstractAxis} = known_first(pare
 Base.summary(io::IO, axis::AbstractAxis) = show(io, axis)
 
 function reverse_keys(axis::AbstractAxis, newinds::AbstractUnitRange)
-    return Axis(reverse(keys(axis)), newinds; checks=NoChecks)
+    return initialize_axis(reverse(keys(axis)), compose_axis(newinds))
 end
 
 ###