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remove spurious space
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lgatto committed Nov 18, 2024
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2 changes: 1 addition & 1 deletion 64-dimred.Rmd
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Expand Up @@ -23,7 +23,7 @@ existing domain knowledge) the results of any clustering algorithm.
variables. A typical example in omics is to summarise (and
visualise) the relation between samples along two dimensions (which
can easily be plotted) even if the data consists of tens of
thousands of dimensions ( genes). Dimensionality reduction is often
thousands of dimensions (genes). Dimensionality reduction is often
used to facilitate visualisation of the data, as well as a
pre-processing method before supervised learning.

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4 changes: 2 additions & 2 deletions docs/404.html
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<meta name="author" content="Laurent Gatto" />

<meta name="date" content="2024-11-17" />
<meta name="date" content="2024-11-18" />

<script type="text/x-mathjax-config">
MathJax.Hub.Config({
Expand Down Expand Up @@ -205,7 +205,7 @@ <h1>Page not found</h1>
<p style="text-align: center;">
</p>
<p class="build-date">Page built:
2024-11-17
2024-11-18
using
R version 4.4.1 (2024-06-14)
</p>
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4 changes: 2 additions & 2 deletions docs/index.html
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<meta name="author" content="Laurent Gatto" />

<meta name="date" content="2024-11-17" />
<meta name="date" content="2024-11-18" />

<script type="text/x-mathjax-config">
MathJax.Hub.Config({
Expand Down Expand Up @@ -349,7 +349,7 @@ <h2>Setup<div class="tooltip"><button class="internal-link-btn" onclick="copy_li
<a href="sec-refresher.html"><button class="btn btn-default">Next</button></a>
</p>
<p class="build-date">Page built:
2024-11-17
2024-11-18
using
R version 4.4.1 (2024-06-14)
</p>
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4 changes: 2 additions & 2 deletions docs/sec-biostrings.html
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<meta name="author" content="Laurent Gatto" />

<meta name="date" content="2024-11-17" />
<meta name="date" content="2024-11-18" />

<script type="text/x-mathjax-config">
MathJax.Hub.Config({
Expand Down Expand Up @@ -937,7 +937,7 @@ <h2>
<a href="sec-norm.html"><button class="btn btn-default">Next</button></a>
</p>
<p class="build-date">Page built:
2024-11-17
2024-11-18
using
R version 4.4.1 (2024-06-14)
</p>
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4 changes: 2 additions & 2 deletions docs/sec-biovis.html
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<meta name="author" content="Laurent Gatto" />

<meta name="date" content="2024-11-17" />
<meta name="date" content="2024-11-18" />

<script type="text/x-mathjax-config">
MathJax.Hub.Config({
Expand Down Expand Up @@ -487,7 +487,7 @@ <h2>
<a href="sec-ccl.html"><button class="btn btn-default">Next</button></a>
</p>
<p class="build-date">Page built:
2024-11-17
2024-11-18
using
R version 4.4.1 (2024-06-14)
</p>
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4 changes: 2 additions & 2 deletions docs/sec-ccl.html
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<meta name="author" content="Laurent Gatto" />

<meta name="date" content="2024-11-17" />
<meta name="date" content="2024-11-18" />

<script type="text/x-mathjax-config">
MathJax.Hub.Config({
Expand Down Expand Up @@ -511,7 +511,7 @@ <h3>Exercise 3<div class="tooltip"><button class="internal-link-btn" onclick="co
<a href="sec-si.html"><button class="btn btn-default">Next</button></a>
</p>
<p class="build-date">Page built:
2024-11-17
2024-11-18
using
R version 4.4.1 (2024-06-14)
</p>
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6 changes: 3 additions & 3 deletions docs/sec-dimred.html
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<meta name="author" content="Laurent Gatto" />

<meta name="date" content="2024-11-17" />
<meta name="date" content="2024-11-18" />

<script type="text/x-mathjax-config">
MathJax.Hub.Config({
Expand Down Expand Up @@ -233,7 +233,7 @@ <h1>
variables. A typical example in omics is to summarise (and
visualise) the relation between samples along two dimensions (which
can easily be plotted) even if the data consists of tens of
thousands of dimensions ( genes). Dimensionality reduction is often
thousands of dimensions (genes). Dimensionality reduction is often
used to facilitate visualisation of the data, as well as a
pre-processing method before supervised learning.</li>
</ul>
Expand Down Expand Up @@ -1340,7 +1340,7 @@ <h2>
<a href="sec-ul.html"><button class="btn btn-default">Next</button></a>
</p>
<p class="build-date">Page built:
2024-11-17
2024-11-18
using
R version 4.4.1 (2024-06-14)
</p>
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4 changes: 2 additions & 2 deletions docs/sec-mlintro.html
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<meta name="author" content="Laurent Gatto" />

<meta name="date" content="2024-11-17" />
<meta name="date" content="2024-11-18" />

<script type="text/x-mathjax-config">
MathJax.Hub.Config({
Expand Down Expand Up @@ -758,7 +758,7 @@ <h2>
<a href="sec-testing.html"><button class="btn btn-default">Next</button></a>
</p>
<p class="build-date">Page built:
2024-11-17
2024-11-18
using
R version 4.4.1 (2024-06-14)
</p>
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4 changes: 2 additions & 2 deletions docs/sec-norm.html
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Expand Up @@ -13,7 +13,7 @@

<meta name="author" content="Laurent Gatto" />

<meta name="date" content="2024-11-17" />
<meta name="date" content="2024-11-18" />

<script type="text/x-mathjax-config">
MathJax.Hub.Config({
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<a href="sec-mlintro.html"><button class="btn btn-default">Next</button></a>
</p>
<p class="build-date">Page built:
2024-11-17
2024-11-18
using
R version 4.4.1 (2024-06-14)
</p>
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4 changes: 2 additions & 2 deletions docs/sec-obj.html
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<meta name="author" content="Laurent Gatto" />

<meta name="date" content="2024-11-17" />
<meta name="date" content="2024-11-18" />

<script type="text/x-mathjax-config">
MathJax.Hub.Config({
Expand Down Expand Up @@ -1029,7 +1029,7 @@ <h2>
<a href="sec-biostrings.html"><button class="btn btn-default">Next</button></a>
</p>
<p class="build-date">Page built:
2024-11-17
2024-11-18
using
R version 4.4.1 (2024-06-14)
</p>
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4 changes: 2 additions & 2 deletions docs/sec-refresher.html
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Expand Up @@ -13,7 +13,7 @@

<meta name="author" content="Laurent Gatto" />

<meta name="date" content="2024-11-17" />
<meta name="date" content="2024-11-18" />

<script type="text/x-mathjax-config">
MathJax.Hub.Config({
Expand Down Expand Up @@ -430,7 +430,7 @@ <h2>
<a href="sec-vis.html"><button class="btn btn-default">Next</button></a>
</p>
<p class="build-date">Page built:
2024-11-17
2024-11-18
using
R version 4.4.1 (2024-06-14)
</p>
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4 changes: 2 additions & 2 deletions docs/sec-si.html
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Expand Up @@ -13,7 +13,7 @@

<meta name="author" content="Laurent Gatto" />

<meta name="date" content="2024-11-17" />
<meta name="date" content="2024-11-18" />

<script type="text/x-mathjax-config">
MathJax.Hub.Config({
Expand Down Expand Up @@ -321,7 +321,7 @@ <h2>
<a href="sec-ccl.html"><button class="btn btn-default">Previous</button></a>
</p>
<p class="build-date">Page built:
2024-11-17
2024-11-18
using
R version 4.4.1 (2024-06-14)
</p>
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4 changes: 2 additions & 2 deletions docs/sec-sl.html
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<meta name="author" content="Laurent Gatto" />

<meta name="date" content="2024-11-17" />
<meta name="date" content="2024-11-18" />

<script type="text/x-mathjax-config">
MathJax.Hub.Config({
Expand Down Expand Up @@ -1051,7 +1051,7 @@ <h2>
<a href="sec-biovis.html"><button class="btn btn-default">Next</button></a>
</p>
<p class="build-date">Page built:
2024-11-17
2024-11-18
using
R version 4.4.1 (2024-06-14)
</p>
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4 changes: 2 additions & 2 deletions docs/sec-testing.html
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<meta name="author" content="Laurent Gatto" />

<meta name="date" content="2024-11-17" />
<meta name="date" content="2024-11-18" />

<script type="text/x-mathjax-config">
MathJax.Hub.Config({
Expand Down Expand Up @@ -1134,7 +1134,7 @@ <h3>The coin example, step by step<div class="tooltip"><button class="internal-l
<a href="sec-dimred.html"><button class="btn btn-default">Next</button></a>
</p>
<p class="build-date">Page built:
2024-11-17
2024-11-18
using
R version 4.4.1 (2024-06-14)
</p>
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4 changes: 2 additions & 2 deletions docs/sec-ul.html
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<meta name="author" content="Laurent Gatto" />

<meta name="date" content="2024-11-17" />
<meta name="date" content="2024-11-18" />

<script type="text/x-mathjax-config">
MathJax.Hub.Config({
Expand Down Expand Up @@ -996,7 +996,7 @@ <h2>
<a href="sec-sl.html"><button class="btn btn-default">Next</button></a>
</p>
<p class="build-date">Page built:
2024-11-17
2024-11-18
using
R version 4.4.1 (2024-06-14)
</p>
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6 changes: 3 additions & 3 deletions docs/sec-vis.html
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Expand Up @@ -13,7 +13,7 @@

<meta name="author" content="Laurent Gatto" />

<meta name="date" content="2024-11-17" />
<meta name="date" content="2024-11-18" />

<script type="text/x-mathjax-config">
MathJax.Hub.Config({
Expand Down Expand Up @@ -949,7 +949,7 @@ <h2>
<span id="cb36-9"><a href="sec-vis.html#cb36-9" tabindex="-1"></a>p2 <span class="ot">&lt;-</span> <span class="fu">ggplot</span>(sim, <span class="fu">aes</span>(<span class="fu">log</span>(x))) <span class="sc">+</span></span>
<span id="cb36-10"><a href="sec-vis.html#cb36-10" tabindex="-1"></a> <span class="fu">geom_histogram</span>(<span class="at">bins =</span> <span class="dv">30</span>)</span>
<span id="cb36-11"><a href="sec-vis.html#cb36-11" tabindex="-1"></a>p1 <span class="sc">+</span> p2</span></code></pre></div>
<pre><code>## Warning: Removed 7898 rows containing non-finite outside the scale range
<pre><code>## Warning: Removed 7988 rows containing non-finite outside the scale range
## (`stat_bin()`).</code></pre>
<div class="figure">
<span style="display:block;" id="fig:sim"></span>
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<a href="sec-obj.html"><button class="btn btn-default">Next</button></a>
</p>
<p class="build-date">Page built:
2024-11-17
2024-11-18
using
R version 4.4.1 (2024-06-14)
</p>
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