Copy R Shiny app to cloud-gov branch and request push to dev #2
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| on: | |
| workflow_dispatch: | |
| inputs: | |
| build_deps: | |
| description: 'Also build R dependencies?' | |
| required: true | |
| type: boolean | |
| permissions: | |
| contents: write | |
| jobs: | |
| copy_code_to_cloud-gov: | |
| runs-on: ubuntu-latest | |
| name: Copy default branch code to shiny-app folder within cloud-gov branch | |
| steps: | |
| - name: Checkout Code | |
| uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 1 | |
| ref: cloud-gov | |
| - name: Delete shiny-app and main-branch folders if they exist | |
| run: | | |
| if [ -d "shiny-app" ]; then rm -fr shiny-app; fi | |
| if [ -d "main-branch" ]; then rm -fr main-branch; fi | |
| - name: Checkout default branch to main-branch path | |
| uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 1 | |
| path: main-branch | |
| - name: Copy everything but .git*, Commit, and Push | |
| if: ${{ success() }} | |
| run: | | |
| mkdir shiny-app | |
| find main-branch/* -maxdepth 0 ! -name ".git*" -print0 | xargs -0 cp -r -t shiny-app | |
| git config user.name github-actions | |
| git config user.email github-actions@github.com | |
| git add shiny-app | |
| git diff-index --quiet HEAD || git commit -m "Automated workflow from GitHub Actions to copy R Shiny app from default branch" | |
| git push | |
| env: | |
| BUILD_DEPS: ${{ inputs.build_deps }} | |
| download_and_vendor_dependencies: | |
| if: ${{ inputs.build_deps }} | |
| needs: copy_code_to_cloud-gov | |
| runs-on: ubuntu-latest | |
| name: Compile and vendor R dependencies for cloud.gov | |
| defaults: | |
| run: | |
| working-directory: /workspace | |
| container: | |
| image: cloudfoundry/cflinuxfs4 | |
| volumes: | |
| - ${{ github.workspace }}:/workspace | |
| steps: | |
| - name: Checkout Code | |
| uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 1 | |
| ref: cloud-gov | |
| - name: Setup Git and remove problematic packages | |
| run: | | |
| git config --global --add safe.directory $(realpath .) | |
| git config user.name github-actions | |
| git config user.email github-actions@github.com | |
| sudo apt --purge autoremove -y libmariadb-dev libmariadb-dev-compat | |
| - name: Setup R | |
| uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: 4.2.2 | |
| - name: Setup pandoc | |
| uses: r-lib/actions/setup-pandoc@v2 | |
| - name: Install R dependencies | |
| uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| packages: | | |
| stringr | |
| devtools | |
| sf | |
| - name: List R dependencies | |
| run: | | |
| sed -n -e 's/^.*- name: //p' r.yml | tr -d '\015' | sed -n -e 'H;${x;s/\n/,/g;s/^,//;p;}' | xargs echo packs= >> $GITHUB_ENV | |
| - name: Download R packages | |
| run: | | |
| if [ -d "vendor_r" ]; then rm -fr vendor_r; fi | |
| if [ -f "r-github-actions-build-deps.txt" ]; then rm r-github-actions-build-deps.txt; fi | |
| Rscript scripts/download_packages.R vendor_r/src/contrib ${{ env.packs }} | |
| more r-github-actions-build-deps.txt | |
| if [ `grep sf r-github-actions-build-deps.txt | wc -c` -gt 0 ]; then echo needs_geo=true; else echo needs_geo=false; fi >> $GITHUB_ENV | |
| if [ `grep pandoc r-github-actions-build-deps.txt | wc -c` -gt 0 ]; then echo needs_pandoc=true; else echo needs_pandoc=false; fi >> $GITHUB_ENV | |
| # if [ -f "r-github-actions-build-deps.txt" ]; then echo needs_libraries=true; else echo needs_libraries=false; fi >> $GITHUB_ENV | |
| - name: Run lib_tar.sh to extract each of the libraries needed by sf | |
| if: ${{ env.needs_geo == 'true' }} | |
| run: | | |
| cd vendor_r/src/contrib | |
| find -name '*_R_x86_64-pc-linux-gnu.tar.gz' -print0 | sed -ze "p;s/\_R_x86_64-pc-linux-gnu//" | xargs -0 -n2 mv | |
| cd ../../.. | |
| if [ -d "r-lib" ]; then rm -fr r-lib; fi | |
| mkdir r-lib | |
| chmod +x scripts/lib_tar.sh | |
| for L in $LIBS | |
| do | |
| find / -iname $L 2>/dev/null | xargs -I {} scripts/lib_tar.sh {} | |
| done | |
| scripts/lib_tar.sh /usr/lib/x86_64-linux-gnu/libsqlite3.so.0 # Another libsqlite3.so.0 exists on the image | |
| git add r-lib | |
| env: | |
| LIBS: libudunits2.so.0 libgeos_c.so libproj.so.22 proj.db libgdal.so.30 | |
| - name: Copy pandoc executable | |
| if: ${{ env.needs_pandoc == 'true' }} | |
| run: | | |
| if [ -d "r-bin" ]; then rm -fr r-bin; fi | |
| mkdir r-bin | |
| cp /usr/bin/pandoc r-bin | |
| git add r-bin | |
| - name: Add additional files to repo if not already there | |
| run: | | |
| if [ ! ls "manifest*.yml" 1> /dev/null 2>&1 ]; then | |
| mv scripts/include/manifest.yml . | |
| git add manifest.yml | |
| fi | |
| if [ ! -f ".cfignore" ]; then | |
| mv scripts/include/.cfignore . | |
| git add .cfignore | |
| fi | |
| if [ ! -f "shiny.R" ]; then | |
| mv scripts/include/shiny.R . | |
| git add shiny.R | |
| fi | |
| - name: Commit & Push | |
| if: ${{ success() }} | |
| run: | | |
| git add vendor_r | |
| git diff-index --quiet HEAD || git commit -m "Automated workflow from GitHub Actions to vendor R dependencies" | |
| git push |