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Adds the ability to bundle adjust CSM images #4537

Merged
merged 39 commits into from
Jun 29, 2021
Merged

Adds the ability to bundle adjust CSM images #4537

merged 39 commits into from
Jun 29, 2021

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jessemapel
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@jessemapel jessemapel commented Jun 17, 2021

Description

This PR merges in the csmbundle feature branch which adds the ability to bundle adjust CSM images (images that have gone through csminit and use a CSM camera model). This is primarily a change to jigsaw application and the Bundle* classes. These changes ARE API BREAKING as we have had to modify the API of several classes, primarily the BundleObservation class.

Due to the more variable nature of CSM model parameters, this also changes how jigsaw's images.csv is output. Each different sensor has its own images.csv file. So if you bundle adjust some LRO NAC pairs and Apollo Metric images, you would get 3 images.csv files:

  1. LRO NAC Left
  2. LRO NAC Right
  3. Apollo Metric

This allows for use to actually have true headers in the images.csv as opposed to the mangled headers we get currently when doing per-sensor solves with jigsaw's scconfig option.

This PR also handles a number of other jigsaw related things:

We also checked several control network generation and editing applications for compatibility with CSM. We did not encounter issues with any of the following applications:

  • footprintinit
  • findimageoverlaps
  • seedgrid
  • autoseed
  • cnetadd
  • pointreg
  • qnet

Related Issue

Fixes #4410

Motivation and Context

This is a major improvement in CSM functionality in ISIS. Now, users can perform bundle adjustments in ISIS and then export the updated CSM state strings to other SETs for further processing.

How Has This Been Tested?

We hand tested everything with a demo CTX network using USGSCSM. All new functions are fully unitTested using a new Mock CSM fixture and jigsaw has had a CSM specific test that bundle adjusts a fully synthetic data set.

Screenshots (if appropriate):

Types of changes

  • Bug fix (non-breaking change which fixes an issue)
  • New feature (non-breaking change which adds functionality)
  • Documentation change (update to the documentation; no code change)
  • Breaking change (fix or feature that would cause existing functionality to change)

Checklist:

  • I have read and agree to abide by the Code of Conduct
  • I have read the CONTRIBUTING document.
  • My change requires a change to the documentation.
  • I have updated the documentation accordingly.
  • I have added tests to cover my changes.
  • All new and existing tests passed.
  • I have added myself to the .zenodo.json document.
  • I have added any user impacting changes to the CHANGELOG.md document.

Licensing

This project is mostly composed of free and unencumbered software released into the public domain, and we are unlikely to accept contributions that are not also released into the public domain. Somewhere near the top of each file should have these words:

This work is free and unencumbered software released into the public domain. In jurisdictions that recognize copyright laws, the author or authors of this software dedicate any and all copyright interest in the software to the public domain.

  • I dedicate any and all copyright interest in this software to the public domain. I make this dedication for the benefit of the public at large and to the detriment of my heirs and successors. I intend this dedication to be an overt act of relinquishment in perpetuity of all present and future rights to this software under copyright law.

Kristin Berry and others added 30 commits June 17, 2021 13:09
* Updates for linking and compiling

* Starting virtual functions
* Add virtuals to AbstractBundleObservation and get compiling again

* Remove function from parent

* Get existing jigsaw tests passing

* Remove unneeded functions from BundleObservation

* Clean up a bit more

* Clean up BundleObservation and AbstractBundleObservation more

* Remove unneeded BodyRotation

* Add target body solve back into bundle adjusment calc

* Remove debug output

* Removed unneeded memeber variables BundleObservation

Co-authored-by: Kristin Berry <kberry@gyro.wr.usgs.gov>
* Now compiling

* Updated CSMCamera tests and docs
…bservation and add Csm camera type to Camera enum
* Creates Serial Numbers using CSM label information

* Updated second SerialNumberList:add function to accommodate CSM label
* In progress

* Added tests and Pvl support

* Add missing 'y' to docs

Co-authored-by: Kristin Berry <kberry@usgs.gov>
* Remove duplicated member variables and accesor functions from BundleObservation and add Csm camera type to Camera enum

* Remove commented-out code

* Imagecoeff migrated into BundleObservation class working

* Get base level working for all coeffs in ISIS

* Fix accidental move into if statement to get tests passing again

* Updated RHS for CsmBundleObservation to work

* Adds point3D support to CSM Camera observations and also adds ground Partials member function to CSMCamera

* Draft of sensor partials code

* Add docs, some fixes based on review requests

* move computation of weights and observation values to bundle observations

* Add observationvalue function to CsmBundleObservation and move the weighting that it is possible to to the observation classes

* Make CSMSolveSet an optional parameter to get jigsaw tests passing again

* cleanup

* Move observation weights into MLE if block

Co-authored-by: Kristin Berry <kberry@gyro.wr.usgs.gov>
* Added test for CSM bundleOutputString

* Passing unit test and updates to bundleOutputString

* Addressed PR feedback
* CSM CSV output

* Small test clean-up

* typo fix

* obs header fix

* Remove param list from bo

* Added debug output

* Now reurning

* Fixed unit test

* xml save test update

* Clean up bundleresults unit test output

* Fixed qfile member

* Fixed old path

* Changed header to use param names

* Making separate csvs

* Added reverse on obs by instId

* Trying to fix multiple sensors

* Fixed images header

* More debug

* removed debug outs

* Added terrible imageindex search

* Added held config fix

* Updated for observation test

* Updated jigsaw test makefiles

* Updated with new tests
* Remove duplicated member variables and accesor functions from BundleObservation and add Csm camera type to Camera enum

* Remove commented-out code

* Imagecoeff migrated into BundleObservation class working

* Get base level working for all coeffs in ISIS

* Fix accidental move into if statement to get tests passing again

* Updated RHS for CsmBundleObservation to work

* Adds point3D support to CSM Camera observations and also adds ground Partials member function to CSMCamera

* Draft of sensor partials code

* Add docs, some fixes based on review requests

* move computation of weights and observation values to bundle observations

* Add observationvalue function to CsmBundleObservation and move the weighting that it is possible to to the observation classes

* Make CSMSolveSet an optional parameter to get jigsaw tests passing again

* cleanup

* Move observation weights into MLE if block

* Added isis vs. csm support to Bundle Observation Vector class to allow jigsaw to proceed past the setup stage for csm networks

* Comment cleanup

* Fix failing unit tests

* Add docs

* Updated based on feedback with potentially temporary fix to get unit tests passing

* Update tests a bit

* Aligned signature definitions and cleaned up

* remove unneeded functions

* More comment cleanup

Co-authored-by: Kristin Berry <kberry@gyro.wr.usgs.gov>
* Converted jigsaw scconfig tests.

* Added jigsaw radar test

* Updated tests to reflect PR #4446 changes & removed makefile tests

* Updates to scconfig tests
* Added cam type checks

* checking csm partials

* Debug partials

* debug corrections

* Fixed index

* Scaled ground partials

* Updated param comparison

* Removed debug out
* Update csm bundlout to have correct spacing for paramter names

* Reverted unintential change

Co-authored-by: Kristin Berry <kberry@gyro.wr.usgs.gov>
* Add latitudinal partials for CSM

* Added test

Co-authored-by: Jesse Mapel <jmapel@usgs.gov>
* Added cms index list error

* Added CSMCameraTests for partials

* Observation clean-up

* Cleaned up vector
* rename BundleObservation classes

* omit changes to sip wrappers
* Updated to get new isd/state form to test jigsaw parsing

* Add functional image-to-ground, ground-to-image, and isd-parsing to TestCsmModel

* Remove temporary csminit test changes

* Updated variable name for clarity
tgiroux and others added 4 commits June 17, 2021 13:12
…ng (#4526)

* remove sip wrappers

* remove deprecated formatBundleOutputString

* remove more sip code and formatBundleOutputString
* Removed debug couts

* Added csmnetwork test fixture

* Added a test for CSM test network

* Adjusted trig functions + added deg/rad conversions

* Initial CSMNetwork data

* Uncommented code

* Removed network path and control network from CSMNetwork fixture

* Removed temporary path from csv comparison

* Adjusted spacing + responded to PR feedback

Co-authored-by: Austin Sanders <arsanders@ugs.gov>
* Added the ability to update CSM model state in jigsaw

* Added missing function docs

* Updated CSM jigsaw test to check apply

* Wrangled up an F
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@kaitlyndlee kaitlyndlee left a comment

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Just those two typos, otherwise looks good!

@jessemapel
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@kaitlyndlee Fixed the typos

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Bundle Adjusting CSM images
6 participants