Merge pull request #93 from VectorInstitute/feature/mamba #249
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| name: code checks | |
| on: | |
| push: | |
| branches: | |
| - main | |
| paths: | |
| - .pre-commit-config.yaml | |
| - .github/workflows/code_checks.yml | |
| - '**.py' | |
| - poetry.lock | |
| - pyproject.toml | |
| - '**.ipynb' | |
| pull_request: | |
| branches: | |
| - main | |
| paths: | |
| - .pre-commit-config.yaml | |
| - .github/workflows/code_checks.yml | |
| - '**.py' | |
| - poetry.lock | |
| - pyproject.toml | |
| - '**.ipynb' | |
| jobs: | |
| run-code-check: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4.2.2 | |
| - name: Install and configure Poetry | |
| uses: snok/install-poetry@v1 | |
| with: | |
| virtualenvs-create: true | |
| virtualenvs-in-project: true | |
| - uses: actions/setup-python@v5.3.0 | |
| with: | |
| python-version: '3.10' | |
| cache: 'poetry' | |
| - name: Install dependencies and check code | |
| run: | | |
| poetry env use '3.10' | |
| source .venv/bin/activate | |
| poetry install --with test --all-extras | |
| pre-commit run --all-files | |
| - name: pip-audit (gh-action-pip-audit) | |
| uses: pypa/gh-action-pip-audit@v1.1.0 | |
| with: | |
| virtual-environment: .venv/ |