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Akramhar authored Aug 1, 2022
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# W-IDM_OmeroImporter
This repository contains software to read a folder containing images, read associated metadata csv files and automatically imports the images in an OMERO repository and write those metadata in OMERO key-value pair.
Additionally it is possible to use it to copy the images in a backup location OR a Backblaze backup location.
The additional feature include:
1) Copy the images and the metadata files in a backup location (either mapped or Backblaze at the moment) and optionally delete the images and metadata files from the origin.
2) Read Micro-Meta app json metadata files together with the associated images and import them on OMERO as file attachments compatibile with Micro-Meta app OMERO plugin.
3) For each run create a file with a list of the succesfully imported files, and a file with a list of csv metadata succesfully files written on OMERO.
4) Use the "previously imported" list to avoid repeating operations in case the files are not removed from the origin folder.
5) Use the "metadata previously written" list to avoid overriding metadata in case the files are not removed from the origin folder.
6) For each run create files with errors for debug purposes.
7) Automatically email the user "owner" of the importing session, if indicated in the parameters, at the end of the importing with relevant data about the process.
8) Automatically email the user "admin" of the setup, if indicated in the parameters, at the end of the importing with attached all the output file.


## Installation
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