Improving Functional Test With pytest Fixtures (#75)

* functional test update

* update rtd docs

* changes in docs

* applied pre-commit formatting

* Update cytosnake/tests/functional/test_cli.py

Co-authored-by: Dave Bunten <ekgto445@gmail.com>

* Update cytosnake/tests/functional/test_cli.py

Co-authored-by: Dave Bunten <ekgto445@gmail.com>

* moved helper functions into test_utils

* added custom marks to tests

* removed extra cmd variable

* added pytest.raises

* added more assertions for multi platemaps test

* update test

* moved test to root, added nf1 data

* added test root path in test utils

* removed unwanted symlink

* update data

* updated dataset and testing

* applied pre-commit formatting

* Update tests/functional/pytest.ini

Co-authored-by: Dave Bunten <ekgto445@gmail.com>

* removed ini file added pytest configs in pyproject

* added assertion function to check files

* added pre-commit formatting

* added citation for nf1 dataset

---------

Co-authored-by: Dave Bunten <ekgto445@gmail.com>

CITATION.cff

@@ -0,0 +1,20 @@
+# This CITATION.cff file was generated with cffinit.
+# Visit https://bit.ly/cffinit to generate yours today!
+
+cff-version: 1.2.0
+title: NF1-CellPainting-Data-Repository
+message: NF1 dataset repository
+type: dataset
+authors:
+  - given-names: Jenna
+    family-names: Tomkinson
+  - given-names: Greg
+    family-names: Way
+identifiers:
+  - type: url
+    value: >-
+      https://github.com/WayScience/nf1_cellpainting_data/tree/main
+    description: Github repository of the dataset
+repository-code: >-
+  https://github.com/WayScience/nf1_cellpainting_data/tree/main
+license: CC0-1.0