Renaming CytoPipe to CytoSnake

[axiomcura]

This PR address the renaming of CytoPipe to CytoSnake.

Effects from rename

Program will be now executed by typing cytosnake instead of cytopipe. For example:

Before change

cytopipe init -d *sqlite -m metadata -b barcodes.txt

After renaming:

cytosnake init -d *sqlite -m metadata -b barcodes.txt

cytosnake specific modules paths have also been changed:

before renaming

from cytopipe.cli.cli_docs import run_doc

After renaming

from cytosnake.cli.cli_docs import run_doc

The documentation has also been updated with the replacement with cytopipe to cytosnake.

[gwaybio]

🐍