Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Merge dev into main #38

Merged
merged 4 commits into from
Mar 29, 2023
Merged

Merge dev into main #38

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
4 commits
Select commit Hold shift + click to select a range
831e9d4
doc: fix the reference ;
WenjieDu Feb 24, 2023
dc3c005
fix: update the dependencies;
WenjieDu Mar 9, 2023
e7b72bd
doc: update README to add pypots installation with conda;
WenjieDu Mar 28, 2023
0611df1
feat: separate the input data assembling functions of training, valid…
WenjieDu Mar 29, 2023
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
26 changes: 17 additions & 9 deletions README.md
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -5,12 +5,16 @@

<p align='center'>
<!-- Python version -->
<img src='https://img.shields.io/badge/python-v3-yellowgreen'>
<img src='https://img.shields.io/badge/python-v3-yellow'>
<!-- PyTorch-->
<img src='https://img.shields.io/static/v1?label=%E2%9D%A4%EF%B8%8F&message=PyTorch&color=DC583A'>
<img src='https://img.shields.io/static/v1?label=PyTorch&message=%E2%9D%A4%EF%B8%8F&color=DC583A&logo=pytorch'>
<!-- PyPI version -->
<a alt='PyPI download number' href='https://pypi.org/project/pypots'>
<img alt="PyPI" src="https://img.shields.io/pypi/v/pypots?color=green&label=PyPI">
<img alt="PyPI" src="https://img.shields.io/pypi/v/pypots?color=yellowgreen&label=PyPI&logo=pypi&logoColor=white">
</a>
<!-- on Anaconda -->
<a alt='on anaconda' href='https://anaconda.org/conda-forge/pypots'>
<img alt="on anaconda" src="https://img.shields.io/conda/vn/conda-forge/pypots?color=green&label=Conda&logo=anaconda" />
</a>
<!-- License -->
<a alt='GPL3 license' href='https://github.com/WenjieDu/PyPOTS/blob/main/LICENSE'>
Expand All @@ -26,7 +30,7 @@
</a>
<!-- PyPI download number -->
<a alt='PyPI download number' href='https://pepy.tech/project/pypots'>
<img src='https://static.pepy.tech/personalized-badge/pypots?period=total&units=none&left_color=grey&right_color=blue&left_text=Downloads'>
<img src='https://static.pepy.tech/personalized-badge/pypots?period=total&units=international_system&left_color=grey&right_color=blue&left_text=Downloads'>
</a>
<!-- Zenodo DOI -->
<a alt='Zenodo DOI' href='https://zenodo.org/badge/latestdoi/475477908'>
Expand All @@ -53,6 +57,10 @@ Visit [TSDB](https://github.com/WenjieDu/TSDB) right now to know more about this
<br clear='left'>

## ❖ Installation
PyPOTS now is available on <a alt='Anaconda' href='https://anaconda.org/conda-forge/pypots'><img align='center' src='https://img.shields.io/badge/Anaconda--lightgreen?style=social&logo=anaconda'></a>❗️

Install it with `conda install pypots`, you may need to specify the channel with option `-c conda-forge`

Install the latest release from PyPI:
> pip install pypots

Expand Down Expand Up @@ -121,16 +129,16 @@ Thank you all for your attention! 😃


[^1]: Du, W., Cote, D., & Liu, Y. (2023). [SAITS: Self-Attention-based Imputation for Time Series](https://doi.org/10.1016/j.eswa.2023.119619). *Expert systems with applications*.
[^2]: Vaswani, A., Shazeer, N.M., Parmar, N., Uszkoreit, J., Jones, L., Gomez, A.N., Kaiser, L., & Polosukhin, I. (2017). [Attention is All you Need](https://papers.nips.cc/paper/2017/hash/3f5ee243547dee91fbd053c1c4a845aa-Abstract.html). *NeurIPS* 2017.
[^3]: Cao, W., Wang, D., Li, J., Zhou, H., Li, L., & Li, Y. (2018). [BRITS: Bidirectional Recurrent Imputation for Time Series](https://papers.nips.cc/paper/2018/hash/734e6bfcd358e25ac1db0a4241b95651-Abstract.html). *NeurIPS* 2018.
[^2]: Vaswani, A., Shazeer, N.M., Parmar, N., Uszkoreit, J., Jones, L., Gomez, A.N., Kaiser, L., & Polosukhin, I. (2017). [Attention is All you Need](https://papers.nips.cc/paper/2017/hash/3f5ee243547dee91fbd053c1c4a845aa-Abstract.html). *NeurIPS 2017*.
[^3]: Cao, W., Wang, D., Li, J., Zhou, H., Li, L., & Li, Y. (2018). [BRITS: Bidirectional Recurrent Imputation for Time Series](https://papers.nips.cc/paper/2018/hash/734e6bfcd358e25ac1db0a4241b95651-Abstract.html). *NeurIPS 2018*.
[^4]: Che, Z., Purushotham, S., Cho, K., Sontag, D.A., & Liu, Y. (2018). [Recurrent Neural Networks for Multivariate Time Series with Missing Values](https://www.nature.com/articles/s41598-018-24271-9). *Scientific Reports*.
[^5]: Zhang, X., Zeman, M., Tsiligkaridis, T., & Zitnik, M. (2022). [Graph-Guided Network for Irregularly Sampled Multivariate Time Series](https://arxiv.org/abs/2110.05357). *ICLR* 2022.
[^6]: Ma, Q., Chen, C., Li, S., & Cottrell, G. W. (2021). [Learning Representations for Incomplete Time Series Clustering](https://ojs.aaai.org/index.php/AAAI/article/view/17070). *AAAI* 2021.
[^5]: Zhang, X., Zeman, M., Tsiligkaridis, T., & Zitnik, M. (2022). [Graph-Guided Network for Irregularly Sampled Multivariate Time Series](https://arxiv.org/abs/2110.05357). *ICLR 2022*.
[^6]: Ma, Q., Chen, C., Li, S., & Cottrell, G. W. (2021). [Learning Representations for Incomplete Time Series Clustering](https://ojs.aaai.org/index.php/AAAI/article/view/17070). *AAAI 2021*.
[^7]: Jong, J.D., Emon, M.A., Wu, P., Karki, R., Sood, M., Godard, P., Ahmad, A., Vrooman, H.A., Hofmann-Apitius, M., & Fröhlich, H. (2019). [Deep learning for clustering of multivariate clinical patient trajectories with missing values](https://academic.oup.com/gigascience/article/8/11/giz134/5626377). *GigaScience*.
[^8]: Chen, X., & Sun, L. (2021). [Bayesian Temporal Factorization for Multidimensional Time Series Prediction](https://arxiv.org/abs/1910.06366). *IEEE transactions on pattern analysis and machine intelligence*.

<details>
<summary>🏠 Visits</summary>
<img align='left' src='https://hits.seeyoufarm.com/api/count/incr/badge.svg?url=https%3A%2F%2Fgithub.com%2FPyPOTS%2FPyPOTS&count_bg=%23009A0A&title_bg=%23555555&icon=&icon_color=%23E7E7E7&title=Visits+since+April+2022&edge_flat=false'>
<img align='left' src='https://hits.seeyoufarm.com/api/count/incr/badge.svg?url=https%3A%2F%2Fgithub.com%2FPyPOTS%2FPyPOTS&count_bg=%23009A0A&title_bg=%23555555&icon=&icon_color=%23E7E7E7&title=Hits&edge_flat=false'>
</details>

4 changes: 2 additions & 2 deletions docs/index.rst
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -97,8 +97,8 @@ Below is an example applying SAITS in PyPOTS to impute missing values in the dat
============================== ================ ========================================================================= ====== =========
Task Type Algorithm Year Reference
============================== ================ ========================================================================= ====== =========
Imputation Neural Network SAITS (Self-Attention-based Imputation for Time Series) 2022 :cite:`du2022SAITS`
Imputation Neural Network Transformer 2017 :cite:`vaswani2017Transformer`, :cite:`du2022SAITS`
Imputation Neural Network SAITS (Self-Attention-based Imputation for Time Series) 2022 :cite:`du2023SAITS`
Imputation Neural Network Transformer 2017 :cite:`vaswani2017Transformer`, :cite:`du2023SAITS`
Imputation, Classification Neural Network BRITS (Bidirectional Recurrent Imputation for Time Series) 2018 :cite:`cao2018BRITS`
Imputation Naive LOCF (Last Observation Carried Forward) / /
Classification Neural Network GRU-D 2018 :cite:`che2018GRUD`
Expand Down
Loading