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update development #1004

Merged
merged 24 commits into from
Apr 1, 2022
Merged

update development #1004

merged 24 commits into from
Apr 1, 2022

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JoranAngevaare
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update development

dachengx and others added 24 commits March 4, 2022 09:04
* Update Shadow plugins
Add Ambience plugins

* Update context
* Update online_monitor.py

I removed the ADC_to_PE hardcoded value 170.

* Update online_monitor.py

change the version of muon_veto monitor 0.0.1 -> 0.0.2
* fix ref to PR in docs

* Update online_monitor.rst
Bumps [actions/checkout](https://github.com/actions/checkout) from 2 to 3.
- [Release notes](https://github.com/actions/checkout/releases)
- [Changelog](https://github.com/actions/checkout/blob/main/CHANGELOG.md)
- [Commits](actions/checkout@v2...v3)

---
updated-dependencies:
- dependency-name: actions/checkout
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
* Patch corrected areas

* Add avg_se_gain to single_value_corrections
* Patch in EventShadow

* Minor change of the dtype decryption
* Bump version of merged S2s

* Added test for peaklet area_fraction
* fix hit sorting, add raw-record-aqm overlap check

* infer n_channels instead of hardcoding
* Updated history

* Bump version: 1.5.0 → 1.6.0
…971)

Bumps [wemake-services/wemake-python-styleguide](https://github.com/wemake-services/wemake-python-styleguide) from 0.16.0 to 0.16.1.
- [Release notes](https://github.com/wemake-services/wemake-python-styleguide/releases)
- [Changelog](https://github.com/wemake-services/wemake-python-styleguide/blob/master/CHANGELOG.md)
- [Commits](wemake-services/wemake-python-styleguide@0.16.0...0.16.1)

---
updated-dependencies:
- dependency-name: wemake-services/wemake-python-styleguide
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

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* Exit 0 on existing data in straxer

* Update straxer
* allow useless frontends

* update tests

* add a warning

* Revert "add a warning"

This reverts commit 3b4221a.
* Position shadow sigma set to nan when S2 not positive

To suppress warning

* Use numpy.errstate to suppress warnings in PeakShadow cut

* Keep version of PeakShadow unchange
* Update requirements-tests.txt

* Update requirements-tests.txt

* Update requirements-tests.txt
Co-authored-by: Joran R. Angevaare <jorana@nikhef.nl>
* Remove Shadow&Ambience plugin SaveWhen.EXPLICIT

* Revert SaveWhen.EXPLICIT for event_shadow

* Still save peak_shadow EXPLICITly

Co-authored-by: Shingo Kazama <kazama@isee.nagoya-u.ac.jp>
Co-authored-by: Joran R. Angevaare <jorana@nikhef.nl>
* fix this issue #977

* Update straxen/plugins/bayes_peak_classification.py

Co-authored-by: Joran R. Angevaare <jorana@nikhef.nl>

Co-authored-by: ahiguera-mx <ahiguera-mx@fried.rice.edu>
Co-authored-by: Joran R. Angevaare <jorana@nikhef.nl>
@JoranAngevaare JoranAngevaare merged commit d2e8d0e into development Apr 1, 2022
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Coverage Status

Coverage increased (+0.09%) to 93.782% when pulling 511a3df on master into 02bfee2 on development.

JoranAngevaare added a commit that referenced this pull request Apr 1, 2022
* Bump zstd from 1.5.0.4 to 1.5.1.0 in /extra_requirements (#909)

Bumps [zstd](https://github.com/sergey-dryabzhinsky/python-zstd) from 1.5.0.4 to 1.5.1.0.
- [Release notes](https://github.com/sergey-dryabzhinsky/python-zstd/releases)
- [Commits](sergey-dryabzhinsky/python-zstd@v1.5.0.4...v1.5.1.0)

---
updated-dependencies:
- dependency-name: zstd
  dependency-type: direct:production
  update-type: version-update:semver-patch
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* Bump wfsim from 0.5.12 to 0.5.13 in /extra_requirements (#907)

Bumps [wfsim](https://github.com/XENONnT/wfsim) from 0.5.12 to 0.5.13.
- [Release notes](https://github.com/XENONnT/wfsim/releases)
- [Changelog](https://github.com/XENONnT/WFSim/blob/master/HISTORY.md)
- [Commits](XENONnT/WFSim@v0.5.12...v0.5.13)

---
updated-dependencies:
- dependency-name: wfsim
  dependency-type: direct:production
  update-type: version-update:semver-patch
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* Bump xarray from 0.20.2 to 0.21.1 in /extra_requirements (#908)

Bumps [xarray](https://github.com/pydata/xarray) from 0.20.2 to 0.21.1.
- [Release notes](https://github.com/pydata/xarray/releases)
- [Changelog](https://github.com/pydata/xarray/blob/main/HOW_TO_RELEASE.md)
- [Commits](pydata/xarray@v0.20.2...v0.21.1)

---
updated-dependencies:
- dependency-name: xarray
  dependency-type: direct:production
  update-type: version-update:semver-minor
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* Bump dask from 2022.01.1 to 2022.2.1 in /extra_requirements (#941)

Bumps [dask](https://github.com/dask/dask) from 2022.01.1 to 2022.2.1.
- [Release notes](https://github.com/dask/dask/releases)
- [Changelog](https://github.com/dask/dask/blob/main/docs/release-procedure.md)
- [Commits](dask/dask@2022.01.1...2022.02.1)

---
updated-dependencies:
- dependency-name: dask
  dependency-type: direct:production
...

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* Bump pytest from 6.2.5 to 7.0.1 in /extra_requirements (#944)

Bumps [pytest](https://github.com/pytest-dev/pytest) from 6.2.5 to 7.0.1.
- [Release notes](https://github.com/pytest-dev/pytest/releases)
- [Changelog](https://github.com/pytest-dev/pytest/blob/main/CHANGELOG.rst)
- [Commits](pytest-dev/pytest@6.2.5...7.0.1)

---
updated-dependencies:
- dependency-name: pytest
  dependency-type: direct:production
  update-type: version-update:semver-major
...

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* Bump coverage from 6.3 to 6.3.2 in /extra_requirements (#947)

Bumps [coverage](https://github.com/nedbat/coveragepy) from 6.3 to 6.3.2.
- [Release notes](https://github.com/nedbat/coveragepy/releases)
- [Changelog](https://github.com/nedbat/coveragepy/blob/master/CHANGES.rst)
- [Commits](nedbat/coveragepy@6.3...6.3.2)

---
updated-dependencies:
- dependency-name: coverage
  dependency-type: direct:production
  update-type: version-update:semver-patch
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* Bump typing-extensions from 4.0.1 to 4.1.1 in /extra_requirements (#948)

Bumps [typing-extensions](https://github.com/python/typing) from 4.0.1 to 4.1.1.
- [Release notes](https://github.com/python/typing/releases)
- [Changelog](https://github.com/python/typing/blob/master/typing_extensions/CHANGELOG)
- [Commits](python/typing@4.0.1...4.1.1)

---
updated-dependencies:
- dependency-name: typing-extensions
  dependency-type: direct:production
  update-type: version-update:semver-minor
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* Bump tensorflow from 2.8.0rc1 to 2.8.0 in /extra_requirements (#949)

Bumps [tensorflow](https://github.com/tensorflow/tensorflow) from 2.8.0rc1 to 2.8.0.
- [Release notes](https://github.com/tensorflow/tensorflow/releases)
- [Changelog](https://github.com/tensorflow/tensorflow/blob/master/RELEASE.md)
- [Commits](tensorflow/tensorflow@v2.8.0-rc1...v2.8.0)

---
updated-dependencies:
- dependency-name: tensorflow
  dependency-type: direct:production
  update-type: version-update:semver-patch
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* Bump pandas from 1.3.5 to 1.4.1 in /extra_requirements (#950)

Bumps [pandas](https://github.com/pandas-dev/pandas) from 1.3.5 to 1.4.1.
- [Release notes](https://github.com/pandas-dev/pandas/releases)
- [Changelog](https://github.com/pandas-dev/pandas/blob/main/RELEASE.md)
- [Commits](pandas-dev/pandas@v1.3.5...v1.4.1)

---
updated-dependencies:
- dependency-name: pandas
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

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* Bump scipy from 1.7.3 to 1.8.0 in /extra_requirements (#942)

Bumps [scipy](https://github.com/scipy/scipy) from 1.7.3 to 1.8.0.
- [Release notes](https://github.com/scipy/scipy/releases)
- [Commits](scipy/scipy@v1.7.3...v1.8.0)

---
updated-dependencies:
- dependency-name: scipy
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

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* Bump hypothesis from 6.36.1 to 6.38.0 in /extra_requirements (#943)

Bumps [hypothesis](https://github.com/HypothesisWorks/hypothesis) from 6.36.1 to 6.38.0.
- [Release notes](https://github.com/HypothesisWorks/hypothesis/releases)
- [Commits](HypothesisWorks/hypothesis@hypothesis-python-6.36.1...hypothesis-python-6.38.0)

---
updated-dependencies:
- dependency-name: hypothesis
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

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* Bump tqdm from 4.62.2 to 4.63.0 in /extra_requirements (#945)

Bumps [tqdm](https://github.com/tqdm/tqdm) from 4.62.2 to 4.63.0.
- [Release notes](https://github.com/tqdm/tqdm/releases)
- [Commits](tqdm/tqdm@v4.62.2...v4.63.0)

---
updated-dependencies:
- dependency-name: tqdm
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

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* Update requirements-tests.txt

* Update requirements-tests.txt

* Bump panel from 0.12.6 to 0.12.7 in /extra_requirements (#1002)

Bumps [panel](https://github.com/holoviz/panel) from 0.12.6 to 0.12.7.
- [Release notes](https://github.com/holoviz/panel/releases)
- [Changelog](https://github.com/holoviz/panel/blob/v0.12.7/CHANGELOG.md)
- [Commits](holoviz/panel@v0.12.6...v0.12.7)

---
updated-dependencies:
- dependency-name: panel
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

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* update development (#1004)

* Update Shadow plugins and add Ambience plugins (#912)

* Update Shadow plugins
Add Ambience plugins

* Update context

* Update online_monitor.py (#958)

* Update online_monitor.py

I removed the ADC_to_PE hardcoded value 170.

* Update online_monitor.py

change the version of muon_veto monitor 0.0.1 -> 0.0.2

* fix ref to PR in docs (#957)

* fix ref to PR in docs

* Update online_monitor.rst

* Bump actions/checkout from 2 to 3 (#962)

Bumps [actions/checkout](https://github.com/actions/checkout) from 2 to 3.
- [Release notes](https://github.com/actions/checkout/releases)
- [Changelog](https://github.com/actions/checkout/blob/main/CHANGELOG.md)
- [Commits](actions/checkout@v2...v3)

---
updated-dependencies:
- dependency-name: actions/checkout
  dependency-type: direct:production
  update-type: version-update:semver-major
...

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* sneaky commit to master

* bump

* Bump version: 1.4.0 → 1.5.0

* Patch corrected areas (#964)

* Patch corrected areas

* Add avg_se_gain to single_value_corrections

* Patch in EventShadow (#967)

* Patch in EventShadow

* Minor change of the dtype decryption

* Bump version of merged S2s (#919)

* Bump version of merged S2s

* Added test for peaklet area_fraction

* Add Bayes peak probability (#954)

* Bayes plugin

* fix hit sorting, add raw-record-aqm overlap check (#961)

* fix hit sorting, add raw-record-aqm overlap check

* infer n_channels instead of hardcoding

* Make v1 6 0 (#968)

* Updated history

* Bump version: 1.5.0 → 1.6.0

* Fix href datakind page (#969)

* Bump wemake-services/wemake-python-styleguide from 0.16.0 to 0.16.1 (#971)

Bumps [wemake-services/wemake-python-styleguide](https://github.com/wemake-services/wemake-python-styleguide) from 0.16.0 to 0.16.1.
- [Release notes](https://github.com/wemake-services/wemake-python-styleguide/releases)
- [Changelog](https://github.com/wemake-services/wemake-python-styleguide/blob/master/CHANGELOG.md)
- [Commits](wemake-services/wemake-python-styleguide@0.16.0...0.16.1)

---
updated-dependencies:
- dependency-name: wemake-services/wemake-python-styleguide
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <support@github.com>

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* Exit 0 on existing data in straxer (#970)

* Exit 0 on existing data in straxer

* Update straxer

* Allow unused rucio local (#976)

* allow useless frontends

* update tests

* add a warning

* Revert "add a warning"

This reverts commit 3b4221a.

* Position shadow sigma set to nan when S2 not positive (#980)

* Position shadow sigma set to nan when S2 not positive

To suppress warning

* Use numpy.errstate to suppress warnings in PeakShadow cut

* Keep version of PeakShadow unchange

* Fix small bug if GPS has larger delay (#986)

* Pin Jinja2 (#988)

* Update requirements-tests.txt

* Update requirements-tests.txt

* Update requirements-tests.txt

* Remove records not hits. (#987)

Co-authored-by: Joran R. Angevaare <jorana@nikhef.nl>

* Remove Shadow&Ambience plugin SaveWhen.EXPLICIT (#982)

* Remove Shadow&Ambience plugin SaveWhen.EXPLICIT

* Revert SaveWhen.EXPLICIT for event_shadow

* Still save peak_shadow EXPLICITly

Co-authored-by: Shingo Kazama <kazama@isee.nagoya-u.ac.jp>
Co-authored-by: Joran R. Angevaare <jorana@nikhef.nl>

* Pin Jinja2==3.0.3 (#990)

* fix issue 977   (#984)

* fix this issue #977

* Update straxen/plugins/bayes_peak_classification.py

Co-authored-by: Joran R. Angevaare <jorana@nikhef.nl>

Co-authored-by: ahiguera-mx <ahiguera-mx@fried.rice.edu>
Co-authored-by: Joran R. Angevaare <jorana@nikhef.nl>

Co-authored-by: Dacheng Xu <xudctron@gmail.com>
Co-authored-by: Tuan Khai Bui <82461188+tuankhaibui@users.noreply.github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Evan Shockley <shockley.evan@gmail.com>
Co-authored-by: Daniel Wenz <43881800+WenzDaniel@users.noreply.github.com>
Co-authored-by: Aaron Higuera <64651045+ahiguera-mx@users.noreply.github.com>
Co-authored-by: RoBGlaBe <53860810+RoBGlaBe@users.noreply.github.com>
Co-authored-by: Shingo Kazama <kazama@isee.nagoya-u.ac.jp>
Co-authored-by: ahiguera-mx <ahiguera-mx@fried.rice.edu>

* Bump pytest from 7.0.1 to 7.1.1 in /extra_requirements (#1003)

Bumps [pytest](https://github.com/pytest-dev/pytest) from 7.0.1 to 7.1.1.
- [Release notes](https://github.com/pytest-dev/pytest/releases)
- [Changelog](https://github.com/pytest-dev/pytest/blob/main/CHANGELOG.rst)
- [Commits](pytest-dev/pytest@7.0.1...7.1.1)

---
updated-dependencies:
- dependency-name: pytest
  dependency-type: direct:production
  update-type: version-update:semver-minor
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* Bump xarray from 0.21.1 to 2022.3.0 in /extra_requirements (#1000)

Bumps [xarray](https://github.com/pydata/xarray) from 0.21.1 to 2022.3.0.
- [Release notes](https://github.com/pydata/xarray/releases)
- [Changelog](https://github.com/pydata/xarray/blob/main/HOW_TO_RELEASE.md)
- [Commits](pydata/xarray@v0.21.1...v2022.03.0)

---
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- dependency-name: xarray
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update development

* Bump dask from 2022.2.1 to 2022.3.0 in /extra_requirements (#998)

Bumps [dask](https://github.com/dask/dask) from 2022.2.1 to 2022.3.0.
- [Release notes](https://github.com/dask/dask/releases)
- [Changelog](https://github.com/dask/dask/blob/main/docs/release-procedure.md)
- [Commits](dask/dask@2022.02.1...2022.03.0)

---
updated-dependencies:
- dependency-name: dask
  dependency-type: direct:production
  update-type: version-update:semver-minor
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* Bump ipywidgets from 7.6.5 to 7.7.0 in /extra_requirements (#997)

Bumps [ipywidgets](http://ipython.org) from 7.6.5 to 7.7.0.

---
updated-dependencies:
- dependency-name: ipywidgets
  dependency-type: direct:production
  update-type: version-update:semver-minor
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* Bump sphinx from 4.4.0 to 4.5.0 in /extra_requirements (#993)

Bumps [sphinx](https://github.com/sphinx-doc/sphinx) from 4.4.0 to 4.5.0.
- [Release notes](https://github.com/sphinx-doc/sphinx/releases)
- [Changelog](https://github.com/sphinx-doc/sphinx/blob/4.x/CHANGES)
- [Commits](sphinx-doc/sphinx@v4.4.0...v4.5.0)

---
updated-dependencies:
- dependency-name: sphinx
  dependency-type: direct:production
  update-type: version-update:semver-minor
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* Bump utilix from 0.6.6 to 0.6.7 in /extra_requirements (#992)

Bumps [utilix](https://github.com/XENONnT/utilix) from 0.6.6 to 0.6.7.
- [Release notes](https://github.com/XENONnT/utilix/releases)
- [Changelog](https://github.com/XENONnT/utilix/blob/master/HISTORY.md)
- [Commits](XENONnT/utilix@v0.6.6...v0.6.7)

---
updated-dependencies:
- dependency-name: utilix
  dependency-type: direct:production
  update-type: version-update:semver-patch
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* Bump tqdm from 4.63.0 to 4.63.1 in /extra_requirements (#999)

Bumps [tqdm](https://github.com/tqdm/tqdm) from 4.63.0 to 4.63.1.
- [Release notes](https://github.com/tqdm/tqdm/releases)
- [Commits](tqdm/tqdm@v4.63.0...v4.63.1)

---
updated-dependencies:
- dependency-name: tqdm
  dependency-type: direct:production
  update-type: version-update:semver-patch
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Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* Bump jupyter-client from 7.1.2 to 7.2.1 in /extra_requirements (#1001)

Bumps [jupyter-client](https://github.com/jupyter/jupyter_client) from 7.1.2 to 7.2.1.
- [Release notes](https://github.com/jupyter/jupyter_client/releases)
- [Changelog](https://github.com/jupyter/jupyter_client/blob/main/CHANGELOG.md)
- [Commits](jupyter/jupyter_client@v7.1.2...v7.2.1)

---
updated-dependencies:
- dependency-name: jupyter-client
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

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* Bump hypothesis from 6.38.0 to 6.40.1 in /extra_requirements (#1005)

Bumps [hypothesis](https://github.com/HypothesisWorks/hypothesis) from 6.38.0 to 6.40.1.
- [Release notes](https://github.com/HypothesisWorks/hypothesis/releases)
- [Commits](HypothesisWorks/hypothesis@hypothesis-python-6.38.0...hypothesis-python-6.40.1)

---
updated-dependencies:
- dependency-name: hypothesis
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

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Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Daniel Wenz <dwenz@students.uni-mainz.de>
Co-authored-by: Dacheng Xu <xudctron@gmail.com>
Co-authored-by: Tuan Khai Bui <82461188+tuankhaibui@users.noreply.github.com>
Co-authored-by: Evan Shockley <shockley.evan@gmail.com>
Co-authored-by: Daniel Wenz <43881800+WenzDaniel@users.noreply.github.com>
Co-authored-by: Aaron Higuera <64651045+ahiguera-mx@users.noreply.github.com>
Co-authored-by: RoBGlaBe <53860810+RoBGlaBe@users.noreply.github.com>
Co-authored-by: Shingo Kazama <kazama@isee.nagoya-u.ac.jp>
Co-authored-by: ahiguera-mx <ahiguera-mx@fried.rice.edu>
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