Bump nbsphinx from 0.8.7 to 0.8.8 in /extra_requirements #871
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Bumps [nbsphinx](https://github.com/spatialaudio/nbsphinx) from 0.8.7 to 0.8.8. - [Release notes](https://github.com/spatialaudio/nbsphinx/releases) - [Changelog](https://github.com/spatialaudio/nbsphinx/blob/master/NEWS.rst) - [Commits](spatialaudio/nbsphinx@0.8.7...0.8.8) --- updated-dependencies: - dependency-name: nbsphinx dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com>
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* Add NaN check * Add a custom exception for nan and add the check for all corrections * use pandas builtin functions as suggested in the review * Use query by index * few tweaks from review * Bump tqdm from 4.62.0 to 4.62.2 in /extra_requirements (#658) Bumps [tqdm](https://github.com/tqdm/tqdm) from 4.62.0 to 4.62.2. - [Release notes](https://github.com/tqdm/tqdm/releases) - [Commits](https://github.com/tqdm/tqdm/compare/v4.62.0...v4.62.2) --- updated-dependencies: - dependency-name: tqdm dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * Bump dask from 2021.7.2 to 2021.8.1 in /extra_requirements (#657) Bumps [dask](https://github.com/dask/dask) from 2021.7.2 to 2021.8.1. - [Release notes](https://github.com/dask/dask/releases) - [Changelog](https://github.com/dask/dask/blob/main/docs/release-procedure.md) - [Commits](https://github.com/dask/dask/compare/2021.07.2...2021.08.1) --- updated-dependencies: - dependency-name: dask dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * Bump pandas from 1.2.5 to 1.3.2 in /extra_requirements (#653) Bumps [pandas](https://github.com/pandas-dev/pandas) from 1.2.5 to 1.3.2. - [Release notes](https://github.com/pandas-dev/pandas/releases) - [Changelog](https://github.com/pandas-dev/pandas/blob/master/RELEASE.md) - [Commits](https://github.com/pandas-dev/pandas/compare/v1.2.5...v1.3.2) --- updated-dependencies: - dependency-name: pandas dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * Bump hypothesis from 6.14.5 to 6.17.4 in /extra_requirements (#651) Bumps [hypothesis](https://github.com/HypothesisWorks/hypothesis) from 6.14.5 to 6.17.4. - [Release notes](https://github.com/HypothesisWorks/hypothesis/releases) - [Commits](https://github.com/HypothesisWorks/hypothesis/compare/hypothesis-python-6.14.5...hypothesis-python-6.17.4) --- updated-dependencies: - dependency-name: hypothesis dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * Bump matplotlib from 3.4.2 to 3.4.3 in /extra_requirements (#656) Bumps [matplotlib](https://github.com/matplotlib/matplotlib) from 3.4.2 to 3.4.3. - [Release notes](https://github.com/matplotlib/matplotlib/releases) - [Commits](https://github.com/matplotlib/matplotlib/compare/v3.4.2...v3.4.3) --- updated-dependencies: - dependency-name: matplotlib dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * Bump scipy from 1.7.0 to 1.7.1 in /extra_requirements (#647) Bumps [scipy](https://github.com/scipy/scipy) from 1.7.0 to 1.7.1. - [Release notes](https://github.com/scipy/scipy/releases) - [Commits](https://github.com/scipy/scipy/compare/v1.7.0...v1.7.1) --- updated-dependencies: - dependency-name: scipy dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * Bump jupyter-client from 6.1.12 to 7.0.2 in /extra_requirements (#649) Bumps [jupyter-client](https://github.com/jupyter/jupyter_client) from 6.1.12 to 7.0.2. - [Release notes](https://github.com/jupyter/jupyter_client/releases) - [Changelog](https://github.com/jupyter/jupyter_client/blob/master/CHANGELOG.md) - [Commits](https://github.com/jupyter/jupyter_client/compare/6.1.12...v7.0.2) --- updated-dependencies: - dependency-name: jupyter-client dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * Bump ipywidgets from 7.6.3 to 7.6.4 in /extra_requirements (#650) Bumps [ipywidgets](http://ipython.org) from 7.6.3 to 7.6.4. --- updated-dependencies: - dependency-name: ipywidgets dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * Bump tensorflow from 2.5.1 to 2.6.0 in /extra_requirements (#655) Bumps [tensorflow](https://github.com/tensorflow/tensorflow) from 2.5.1 to 2.6.0. - [Release notes](https://github.com/tensorflow/tensorflow/releases) - [Changelog](https://github.com/tensorflow/tensorflow/blob/master/RELEASE.md) - [Commits](https://github.com/tensorflow/tensorflow/compare/v2.5.1...v2.6.0) --- updated-dependencies: - dependency-name: tensorflow dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * Bump pytest from 6.2.4 to 6.2.5 in /extra_requirements (#654) Bumps [pytest](https://github.com/pytest-dev/pytest) from 6.2.4 to 6.2.5. - [Release notes](https://github.com/pytest-dev/pytest/releases) - [Changelog](https://github.com/pytest-dev/pytest/blob/main/CHANGELOG.rst) - [Commits](https://github.com/pytest-dev/pytest/compare/6.2.4...6.2.5) --- updated-dependencies: - dependency-name: pytest dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * Fix minianalyses from apply_selection (#666) * Fix minianalyses from apply_selection * Update mini_analysis.py * Add small feature for printing versions of git (#665) * add small feature for printing versions of git * allow detached heads * Update misc.py * Update bootstrax * Update test_misc.py * fix some warnings from testing (#667) * fix some warnings from testing * Update rundb.py * warn by default * import typing * Add posdiff plugin (#669) * Add posdiff plugin Co-authored-by: Shengchao Li <scli@dali-login2.rcc.local> Co-authored-by: Joran Angevaare <jorana@nikhef.nl> Co-authored-by: Evan Shockley <eshockley@physics.ucsd.edu> * Bump jupyter-client from 7.0.2 to 7.0.5 in /extra_requirements (#675) Bumps [jupyter-client](https://github.com/jupyter/jupyter_client) from 7.0.2 to 7.0.5. - [Release notes](https://github.com/jupyter/jupyter_client/releases) - [Changelog](https://github.com/jupyter/jupyter_client/blob/master/CHANGELOG.md) - [Commits](https://github.com/jupyter/jupyter_client/compare/v7.0.2...v7.0.5) --- updated-dependencies: - dependency-name: jupyter-client dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * Bump scikit-learn from 0.24.2 to 1.0 in /extra_requirements (#676) Bumps [scikit-learn](https://github.com/scikit-learn/scikit-learn) from 0.24.2 to 1.0. - [Release notes](https://github.com/scikit-learn/scikit-learn/releases) - [Commits](https://github.com/scikit-learn/scikit-learn/compare/0.24.2...1.0) --- updated-dependencies: - dependency-name: scikit-learn dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * Bump hypothesis from 6.17.4 to 6.23.1 in /extra_requirements (#680) Bumps [hypothesis](https://github.com/HypothesisWorks/hypothesis) from 6.17.4 to 6.23.1. - [Release notes](https://github.com/HypothesisWorks/hypothesis/releases) - [Commits](https://github.com/HypothesisWorks/hypothesis/compare/hypothesis-python-6.17.4...hypothesis-python-6.23.1) --- updated-dependencies: - dependency-name: hypothesis dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * use strax notebook pbar if applicible (#685) * Implement SDSC as a local RSE for Expanse (#687) * Implement SDSC for rucio frontend / local backend * Fix typo in comment * Update contexts.py (#673) * Skips superruns in rucio frontend (#689) * Skips superruns in rucio frontend Co-authored-by: Joran Angevaare <jorana@nikhef.nl> * Previous S2 Shadow Plugin draft (#664) * Plugin which computes S2 shadows Co-authored-by: Kexin Liu <kexinliu@dali-login1.rcc.local> Co-authored-by: Shingo Kazama <kazama@isee.nagoya-u.ac.jp> Co-authored-by: Daniel Wenz <43881800+WenzDaniel@users.noreply.github.com> * Warn about non-loadable loggers (#693) * Warn about non-loadable loggers * Update bootstrax * Add n saturated channels (#691) * Add n_saturated channels, makes peaklets explicit. * Extend tight coincidence by channels * Propagate info to peak basics * Bump peaklet versions * Bump peak_basics versions * Propagate information to event_baiscs and bump version. * Updated function call and return * Add test for tight coincidence * Some review dog things * Move buffer cleaning * Fixed field help Co-authored-by: Joran Angevaare <jorana@nikhef.nl> * add small tool to extract run comments from database (#692) * add small tool to extract run comments from database * fix review comments * Update misc.py * Update pytest.yml * Update online_monitor_nv to v0.0.3 (#696) * Added events_nv_area_per_chunk * updated S2 corrected area (#686) * updated S2 corrected area Co-authored-by: Jingqiang Ye <jyy2139@columbia.edu> Co-authored-by: Shingo Kazama <kazama@isee.nagoya-u.ac.jp> Co-authored-by: Joran Angevaare <jorana@nikhef.nl> Co-authored-by: Daniel Wenz <dwenz@kabelmail.de> * Use admix in straxen (#688) * Implement SDSC for rucio frontend / local backend * Fix typo in comment * Have RucioRemoteBackend select RSEs in smart way * Bug fix in cases where RucioLocalBackend is not appended to the backends list * Update straxen/rucio.py Co-authored-by: Joran Angevaare <jorana@nikhef.nl> * Use admix * Use admix now in remote plugin * Dont require admix * Update contexts.py and rucio.py to address Joran's comments * small tweaks to #688 * use strax#541 * fix bug * fix docstring Co-authored-by: Joran Angevaare <jorana@nikhef.nl> Co-authored-by: Daniel Wenz <43881800+WenzDaniel@users.noreply.github.com> * Add RunDb read/write-test (#695) * add read write test for rundb * cleanup * remove pprint * important if * review comments * fix non-utilx test * remove _list_available?? * hack utilix * hack it gooood * Version bump of hitlets (#690) * Version bump of hitlets * Changed path to new peak data Co-authored-by: Joran Angevaare <jorana@nikhef.nl> * Implemented channel range to support he channel plugins * Fix bug in rucio frontend (#699) * Make release v1 1 0 (#698) * Updated history * Bump version: 1.0.0 → 1.1.0 * Update test_database_frontends.py * ready for patch release * Bump version: 1.1.0 → 1.1.1 * Set default drift time as nan (#700) * change default drift time to nan * change drift time to float to avoid convert nan into integer * Test new numba (#702) * Revert auto inclusion of rucio remote #688 (#701) * Revert auto inclusion of rucio remote #688 * allow other frontends to have the data * Also don't mark things available if not allowed * Revert "Also don't mark things available if not allowed" This reverts commit d6fb67ad8c6338e4dc9a7773fd50549811f476e3. * Plugin for afterpulse processing (#549) * add plugin for APs Co-authored-by: Luisa Hoetzsch <hoetzsch@dali-login1.rcc.local> Co-authored-by: Luisa Hoetzsch <luisa.hoetzsch@mpi-hd.mpg.de> Co-authored-by: Joran Angevaare <jorana@nikhef.nl> Co-authored-by: Evan Shockley <eshockley@physics.ucsd.edu> Co-authored-by: Daniel Wenz <43881800+WenzDaniel@users.noreply.github.com> Co-authored-by: Shingo Kazama <kazama@isee.nagoya-u.ac.jp> * Refactor straxen tests (#703) * use a small test data file * Bump dask from 2021.8.1 to 2021.10.0 in /extra_requirements (#712) Bumps [dask](https://github.com/dask/dask) from 2021.8.1 to 2021.10.0. - [Release notes](https://github.com/dask/dask/releases) - [Changelog](https://github.com/dask/dask/blob/main/docs/release-procedure.md) - [Commits](https://github.com/dask/dask/compare/2021.08.1...2021.10.0) --- updated-dependencies: - dependency-name: dask dependency-type: direct:production ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * fix bug in CMT (#710) * fix bug in CMT * remove nv&mv chaining plugins * Revert "remove nv&mv chaining plugins" This reverts commit 08bb8f434a4658d117adca8c4393d70f2ce41546. * Fix one year querries (#711) * Fix querries which last longer than one year * Changed querring to support >1 year queries * Reviewdog comments Co-authored-by: Joran Angevaare <jorana@nikhef.nl> * small codefactor patch (#714) * test nv with nv data (#709) * test nv with nv data * remove tagging plugins * test them here * Update test_utils.py * Update test_nveto_recorder.py * WFSim registry as argument for simulations context (#713) * WFSim registry as argument for sims context * Copypasting Joran's function * Shame on me * use new func Co-authored-by: Joran Angevaare <jorana@nikhef.nl> * Veto monitor (#707) * add data kinds to monitor neutron and muon Veto add online_monitor_nv and online_monitor_mv * Update contexts.py * Update online_monitor.py * Update contexts.py * Update online_monitor.py I update OnlineMonitorNV (to v.0.0.4) and OnlineMonitorMV. OnlineMonitorMV is a child plugin of OnlineMonitorNV. * Update contexts.py * Update online_monitor.py * Update online_monitor.py * small editorial changes Co-authored-by: Daniel Wenz <43881800+WenzDaniel@users.noreply.github.com> Co-authored-by: Joran Angevaare <jorana@nikhef.nl> * Update S1 AFT map in event pattern fit (#697) * Update S1 AFT map in event pattern fit * Update event_patternfit.py * test s1 aft map unity * Update test_utils.py * Update test_utils.py Co-authored-by: GiovanniVolta <gvolta@dali-login1.rcc.local> Co-authored-by: Joran Angevaare <jorana@nikhef.nl> * Refactor s2 correction (#704) * refactor fields for correctedareas * add corrected s2 with s2xy correction only * fix dtype * use infer_dtype * remove redundant variables * remove elife_corr from infer_dtype * line break after operator * use strax.to_str_tuple * remove cs2_bottom_wo_elifecorr * fix bug Co-authored-by: Joran Angevaare <jorana@nikhef.nl> * Unify CMT call in contexts (#717) Co-authored-by: Joran Angevaare <jorana@nikhef.nl> * Remove old bootstrax argument * add small test for wfsim (#716) * Update test_contexts.py * Update requirements-tests.txt * Update test_contexts.py * Update pytest.yml * Update pytest.yml * Update pytest.yml * Update pytest.yml * Update pytest.yml * this is so confusing * Update pytest.yml * Update test_contexts.py * Update test_contexts.py * Update pytest.yml * Update requirements.txt * Update requirements-tests.txt * new version * Bump version: 1.1.1 → 1.1.2 * Track typing_extensions==3.7.4.3 (#722) * Process afterpulses on ebs (#727) * Update test_misc.py * test_widgets is broken? (#726) * test_widgets is broken? * Update test_misc.py * Update test_misc.py * Bump scikit-learn from 1.0 to 1.0.1 in /extra_requirements (#737) Bumps [scikit-learn](https://github.com/scikit-learn/scikit-learn) from 1.0 to 1.0.1. - [Release notes](https://github.com/scikit-learn/scikit-learn/releases) - [Commits](https://github.com/scikit-learn/scikit-learn/compare/1.0...1.0.1) --- updated-dependencies: - dependency-name: scikit-learn dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Joran Angevaare <jorana@nikhef.nl> * Bump utilix from 0.6.1 to 0.6.5 in /extra_requirements (#736) Bumps [utilix](https://github.com/XENONnT/utilix) from 0.6.1 to 0.6.5. - [Release notes](https://github.com/XENONnT/utilix/releases) - [Changelog](https://github.com/XENONnT/utilix/blob/master/HISTORY.md) - [Commits](https://github.com/XENONnT/utilix/compare/v0.6.1...v0.6.5) --- updated-dependencies: - dependency-name: utilix dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Joran Angevaare <jorana@nikhef.nl> * Bump jupyter-client from 7.0.5 to 7.0.6 in /extra_requirements (#734) Bumps [jupyter-client](https://github.com/jupyter/jupyter_client) from 7.0.5 to 7.0.6. - [Release notes](https://github.com/jupyter/jupyter_client/releases) - [Changelog](https://github.com/jupyter/jupyter_client/blob/master/CHANGELOG.md) - [Commits](https://github.com/jupyter/jupyter_client/compare/v7.0.5...v7.0.6) --- updated-dependencies: - dependency-name: jupyter-client dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Joran Angevaare <jorana@nikhef.nl> * Bump flake8 from 3.9.2 to 4.0.1 in /extra_requirements (#730) Bumps [flake8](https://github.com/pycqa/flake8) from 3.9.2 to 4.0.1. - [Release notes](https://github.com/pycqa/flake8/releases) - [Commits](https://github.com/pycqa/flake8/compare/3.9.2...4.0.1) --- updated-dependencies: - dependency-name: flake8 dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Joran Angevaare <jorana@nikhef.nl> * Bump blosc from 1.10.4 to 1.10.6 in /extra_requirements (#728) Bumps [blosc](https://github.com/blosc/python-blosc) from 1.10.4 to 1.10.6. - [Release notes](https://github.com/blosc/python-blosc/releases) - [Changelog](https://github.com/Blosc/python-blosc/blob/master/RELEASE_NOTES.rst) - [Commits](https://github.com/blosc/python-blosc/compare/v1.10.4...v1.10.6) --- updated-dependencies: - dependency-name: blosc dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Joran Angevaare <jorana@nikhef.nl> * Fix deprecation warning (#723) * Bump pytest-cov from 2.12.1 to 3.0.0 in /extra_requirements (#732) Bumps [pytest-cov](https://github.com/pytest-dev/pytest-cov) from 2.12.1 to 3.0.0. - [Release notes](https://github.com/pytest-dev/pytest-cov/releases) - [Changelog](https://github.com/pytest-dev/pytest-cov/blob/master/CHANGELOG.rst) - [Commits](https://github.com/pytest-dev/pytest-cov/compare/v2.12.1...v3.0.0) --- updated-dependencies: - dependency-name: pytest-cov dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * Bump hypothesis from 6.23.1 to 6.24.1 in /extra_requirements (#738) Bumps [hypothesis](https://github.com/HypothesisWorks/hypothesis) from 6.23.1 to 6.24.1. - [Release notes](https://github.com/HypothesisWorks/hypothesis/releases) - [Commits](https://github.com/HypothesisWorks/hypothesis/compare/hypothesis-python-6.23.1...hypothesis-python-6.24.1) --- updated-dependencies: - dependency-name: hypothesis dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Joran Angevaare <jorana@nikhef.nl> * Test installation without extra requirements (#725) * Test installation without extra requirements * Update requirements.txt * Update requirements.txt * Update requirements.txt * Update requirements.txt * Update requirements.txt * Update requirements.txt * Update requirements.txt * Update requirements.txt * Update requirements.txt * Update requirements-tests.txt (#739) * Fix history * Add a few special cases (#740) * Add a few special cases The renaming for variables starting with cs1/cs2 is made via explicitly written special cases. Those were not updated for a few added fields. * corrected syntax error * Increment plugin version Co-authored-by: Joran Angevaare <jorana@nikhef.nl> * Remove RuntimeError in RucioFrontend (#719) * Add try except for rucio frontend * remove runtime error in rucio Co-authored-by: Joran Angevaare <jorana@nikhef.nl> * use alt z for alternative s1 binomial test (#724) * use alt z for alternative s1 binomial test Co-authored-by: GiovanniVolta <gvolta@dali-login1.rcc.local> Co-authored-by: Joran Angevaare <jorana@nikhef.nl> * Add zenodo (#742) * Add zenodo * Update README.md * Fix keras requirement (#748) * Bump tensorflow from 2.6.0 to 2.6.1 in /extra_requirements (#752) Bumps [tensorflow](https://github.com/tensorflow/tensorflow) from 2.6.0 to 2.6.1. - [Release notes](https://github.com/tensorflow/tensorflow/releases) - [Changelog](https://github.com/tensorflow/tensorflow/blob/master/RELEASE.md) - [Commits](https://github.com/tensorflow/tensorflow/compare/v2.6.0...v2.6.1) --- updated-dependencies: - dependency-name: tensorflow dependency-type: direct:production ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * update docs (#743) * update docs * typo * Set check_broken=False for RucioFrontend.find (#749) Co-authored-by: Joran Angevaare <jorana@nikhef.nl> * Added resource exception (#755) * Added resource exception * Add perpendicular wires handling info and function (#756) * Add perpendicular wires handling info and function Co-authored-by: Daniel Wenz <43881800+WenzDaniel@users.noreply.github.com> * Track bokeh (#759) * Track bokeh * Update requirements-tests.txt * Adding code comments for corrected z position (#763) * Small fix in definition of buffer (#760) * Small fix in definition of buffer * Reactivate scada test (#764) * Reactivate scada * Trigger new run https://xenonnt.slack.com/archives/C016UJZ090B/p1637148920183500 * Update test_scada.py * Revert "Small fix in definition of buffer (#760)" (#766) This reverts commit fd34198df065f18a003dbb09c4b7589cd9ba1a5b. * cleanup bootstrax logic for target determiniation (#768) * cleanup bootstrax logic * just in case one uses capital letters * Add URL based configs (#758) * add optional pyroscope profiling * add URLConfig and basic protocol implementations * Update straxen/url_config.py Co-authored-by: Joran Angevaare <joranangevaare@gmail.com> * undo accidental change to bootstrax * docstring and explicit exeption catch * Update straxen/url_config.py Co-authored-by: Joran Angevaare <joranangevaare@gmail.com> Co-authored-by: Yossi Mosbacher <joe.mosbacher> Co-authored-by: Joran Angevaare <joranangevaare@gmail.com> Co-authored-by: Daniel Wenz <43881800+WenzDaniel@users.noreply.github.com> Co-authored-by: Joran Angevaare <jorana@nikhef.nl> * Explicitly set infer_dtype=False for all Options (#750) * add infer_dtype to all options * rename infer_dtype to infer_type * pin strax version since not backward compatible Co-authored-by: Yossi Mosbacher <joe.mosbacher> Co-authored-by: Joran Angevaare <jorana@nikhef.nl> * new release * Bump version: 1.1.2 → 1.1.3 * Update bootstrax * Implement peak-level shadow and event-level shadow refactor (#753) * Add PeakShadow plugin. * Separate event shadow and peak shadow Co-authored-by: chnlkx <lkx21@mails.tsinghua.edu.cn> * Bump supercharge/mongodb-github-action from 1.6.0 to 1.7.0 (#771) Bumps [supercharge/mongodb-github-action](https://github.com/supercharge/mongodb-github-action) from 1.6.0 to 1.7.0. - [Release notes](https://github.com/supercharge/mongodb-github-action/releases) - [Changelog](https://github.com/supercharge/mongodb-github-action/blob/main/CHANGELOG.md) - [Commits](https://github.com/supercharge/mongodb-github-action/compare/1.6.0...1.7.0) --- updated-dependencies: - dependency-name: supercharge/mongodb-github-action dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * Add main peaks' shadow for event shadow (#770) * Add main peaks' shadow for event shadow Co-authored-by: Daniel Wenz <43881800+WenzDaniel@users.noreply.github.com> * Cache dependencies (#772) * cache dependencies * Update pytest.yml * Update contexts.yml * order events * Bump wfsim tests (#773) * wipe the online monitor * Revert "wipe the online monitor" This reverts commit a945e75725c40d7661f90cb3032d20f15175d18d. * whipe online monitor data (#777) * whipe online monitor data * rever pycharm nonsense * revert it more * pycharm doesn't even allow me to copy past it back * Pin pymongo (#801) * Bump packaging from 20.8 to 21.3 in /extra_requirements (#794) Bumps [packaging](https://github.com/pypa/packaging) from 20.8 to 21.3. - [Release notes](https://github.com/pypa/packaging/releases) - [Changelog](https://github.com/pypa/packaging/blob/main/CHANGELOG.rst) - [Commits](https://github.com/pypa/packaging/compare/20.8...21.3) --- updated-dependencies: - dependency-name: packaging dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * Bump xarray from 0.19.0 to 0.20.1 in /extra_requirements (#799) Bumps [xarray](https://github.com/pydata/xarray) from 0.19.0 to 0.20.1. - [Release notes](https://github.com/pydata/xarray/releases) - [Changelog](https://github.com/pydata/xarray/blob/main/HOW_TO_RELEASE.md) - [Commits](https://github.com/pydata/xarray/compare/v0.19.0...v0.20.1) --- updated-dependencies: - dependency-name: xarray dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Joran Angevaare <jorana@nikhef.nl> * Bump wfsim from 0.5.10 to 0.5.11 in /extra_requirements (#798) Bumps [wfsim](https://github.com/XENONnT/wfsim) from 0.5.10 to 0.5.11. - [Release notes](https://github.com/XENONnT/wfsim/releases) - [Changelog](https://github.com/XENONnT/WFSim/blob/master/HISTORY.md) - [Commits](https://github.com/XENONnT/wfsim/compare/v0.5.10...v0.5.11) --- updated-dependencies: - dependency-name: wfsim dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Joran Angevaare <jorana@nikhef.nl> * Bump hypothesis from 6.24.1 to 6.29.0 in /extra_requirements (#797) Bumps [hypothesis](https://github.com/HypothesisWorks/hypothesis) from 6.24.1 to 6.29.0. - [Release notes](https://github.com/HypothesisWorks/hypothesis/releases) - [Commits](https://github.com/HypothesisWorks/hypothesis/compare/hypothesis-python-6.24.1...hypothesis-python-6.29.0) --- updated-dependencies: - dependency-name: hypothesis dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Joran Angevaare <jorana@nikhef.nl> * Bump dask from 2021.10.0 to 2021.11.2 in /extra_requirements (#786) Bumps [dask](https://github.com/dask/dask) from 2021.10.0 to 2021.11.2. - [Release notes](https://github.com/dask/dask/releases) - [Changelog](https://github.com/dask/dask/blob/main/docs/release-procedure.md) - [Commits](https://github.com/dask/dask/compare/2021.10.0...2021.11.2) --- updated-dependencies: - dependency-name: dask dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Joran Angevaare <jorana@nikhef.nl> * Bump coveralls from 3.2.0 to 3.3.1 in /extra_requirements (#789) Bumps [coveralls](https://github.com/TheKevJames/coveralls-python) from 3.2.0 to 3.3.1. - [Release notes](https://github.com/TheKevJames/coveralls-python/releases) - [Changelog](https://github.com/TheKevJames/coveralls-python/blob/master/CHANGELOG.md) - [Commits](https://github.com/TheKevJames/coveralls-python/compare/3.2.0...3.3.1) --- updated-dependencies: - dependency-name: coveralls dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Joran Angevaare <jorana@nikhef.nl> * specified wfsim twice * Bump jupyter-client from 7.0.6 to 7.1.0 in /extra_requirements (#788) Bumps [jupyter-client](https://github.com/jupyter/jupyter_client) from 7.0.6 to 7.1.0. - [Release notes](https://github.com/jupyter/jupyter_client/releases) - [Changelog](https://github.com/jupyter/jupyter_client/blob/master/CHANGELOG.md) - [Commits](https://github.com/jupyter/jupyter_client/compare/v7.0.6...v7.1.0) --- updated-dependencies: - dependency-name: jupyter-client dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Joran Angevaare <jorana@nikhef.nl> * Bump coverage from 5.5 to 6.2 in /extra_requirements (#790) Bumps [coverage](https://github.com/nedbat/coveragepy) from 5.5 to 6.2. - [Release notes](https://github.com/nedbat/coveragepy/releases) - [Changelog](https://github.com/nedbat/coveragepy/blob/master/CHANGES.rst) - [Commits](https://github.com/nedbat/coveragepy/compare/coverage-5.5...6.2) --- updated-dependencies: - dependency-name: coverage dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Joran Angevaare <jorana@nikhef.nl> * Add refactor event building cut (#778) * Move le/re into setup for event building cut. * Add comment * Remove whitespace * Add types to plugin * Matplotlib changed requirements (#805) * fix shadow plugins * move to peaks/events * address review * make static * issue with the requirements? * URLConfig not in strax (#781) * URLConfig not in strax * add import to package init * add tests for URLConfig * replace deprecates pymongo Cursor.count * skip cmt test if utilix not configured * require pymongo<=3.12.0 to avoid breaking changes * add md5 to file documents for pymongo 4.0 support * add protocol description method * SecondaryPreferred read preference for OM tests * Update requirements-tests.txt * test fsspec protocol * formatting * fix typos and print_protocols-dummy test * add type hints to protocols Co-authored-by: Yossi Mosbacher <joe.mosbacher> Co-authored-by: Joran Angevaare <jorana@nikhef.nl> Co-authored-by: Yossi Mosbacher <joe.mosbacher@gmail.com> * Revert "URLConfig not in strax (#781)" (#807) This reverts commit b5f3d99344fe9f46eec8126338afce99fed92168. * Fix #781 (#808) * can we disable codefactor please (#809) * Update bokeh, panel, tensorflow and keras (#796) * Bump bokeh from 2.3.3 to 2.4.2 in /extra_requirements Bumps [bokeh](https://github.com/bokeh/bokeh) from 2.3.3 to 2.4.2. - [Release notes](https://github.com/bokeh/bokeh/releases) - [Changelog](https://github.com/bokeh/bokeh/blob/branch-3.0/CHANGELOG) - [Commits](https://github.com/bokeh/bokeh/compare/2.3.3...2.4.2) --- updated-dependencies: - dependency-name: bokeh dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <support@github.com> * Update requirements-tests.txt * Update requirements-tests.txt * Update requirements-tests.txt * Update bokeh_waveform_plot.py Co-authored-by: Joran Angevaare <jorana@nikhef.nl> * Loose packaging requirement (#810) * Exclude S1 as triggering peak (#779) Co-authored-by: Shingo Kazama <kazama@isee.nagoya-u.ac.jp> Co-authored-by: Jingqiang Ye <jyy2139@columbia.edu> * fix dep. order * sort alphabetically * Restore #760 Patch peaks merging (#767) * Update definition array_valued (#757) * use channel tight coincidence level (#745) Co-authored-by: Evan Shockley <eshockley@physics.ucsd.edu> Co-authored-by: Shingo Kazama <kazama@isee.nagoya-u.ac.jp> Co-authored-by: Daniel Wenz <43881800+WenzDaniel@users.noreply.github.com> * Two manual boundaries (updated 11/24/2021) (#775) Updates classification boundaries for S1 and Se * S2 pattern fit (#780) * add neural tensorflow method chi2 * Revert "Update definition array_valued (#757)" (#812) This reverts commit 23e4eacb4191ae3444df2bdd483795bd93b28026. * Itp test (#813) * can we disable codefactor please * add itp test * Events synchronize (#761) *Add preliminary plugin for synchronized time stamps * Performance update for binomial test (#783) * update binom test * Fix broken matplotlib/minianalyses (#815) * fix broken matplotlib * fix some tests * update tests * remove asserts * Update test_mini_analyses.py * fix multihist syntax * Update matplotlib_utils.py * Update straxen/analyses/bokeh_waveform_plot.py * Update straxen/analyses/bokeh_waveform_plot.py * Update straxen/analyses/bokeh_waveform_plot.py * Update straxen/analyses/bokeh_waveform_plot.py * Update straxen/analyses/bokeh_waveform_plot.py * Update straxen/analyses/bokeh_waveform_plot.py * Update straxen/analyses/bokeh_waveform_plot.py * Update straxen/analyses/bokeh_waveform_plot.py * Update straxen/analyses/holoviews_waveform_display.py * Update straxen/analyses/posrec_comparison.py * Update straxen/analyses/posrec_comparison.py * Update straxen/analyses/posrec_comparison.py * Update straxen/analyses/posrec_comparison.py * Update straxen/analyses/bokeh_waveform_plot.py * Update straxen/analyses/bokeh_waveform_plot.py * Update straxen/analyses/bokeh_waveform_plot.py * fix codefactor * sorry sorry for this mess * assert is inverted * this is not log * fix more bugs * deprecate tight layout * add docs * review comments * stupid typo * Remove codefactor (#818) https://xenonnt.slack.com/archives/C016UJZ090B/p1639500799304900 * Rename tight coincidence (#825) * Rename tight coincidence -> tight_coincidence channel, remove previous tight coincidence. * Update help * Remove field * Remove n_hits computation * Update the test * URLConfig take protocol for nested keys (#826) * adjust take protocol for lists * one more test, thanks Yossi Co-authored-by: Yossi Mosbacher <joe.mosbacher> Co-authored-by: Joran Angevaare <jorana@nikhef.nl> * Restore #757 (#814) Co-authored-by: Johanna Jakob <56300925+jjakob03@users.noreply.github.com> Co-authored-by: Daniel Wenz <43881800+WenzDaniel@users.noreply.github.com> Co-authored-by: tianyu zhu <tz2263@columbia.edu> * Bump wemake-services/wemake-python-styleguide from 0.15.3 to 0.16.0 (#829) Bumps [wemake-services/wemake-python-styleguide](https://github.com/wemake-services/wemake-python-styleguide) from 0.15.3 to 0.16.0. - [Release notes](https://github.com/wemake-services/wemake-python-styleguide/releases) - [Changelog](https://github.com/wemake-services/wemake-python-styleguide/blob/master/CHANGELOG.md) - [Commits](https://github.com/wemake-services/wemake-python-styleguide/compare/0.15.3...0.16.0) --- updated-dependencies: - dependency-name: wemake-services/wemake-python-styleguide dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * Unittest for DAQreader (#828) * add daq_reader_test * add review comments * remove the erease option, it absolutely is one big horrible idea * fix review comments * Fix nv testing data (#830) * Another try at codefactor (#831) Let's give it another try, other tools have their own issues too * Move URLConfig cache to global dictionary (#822) * Adds size_of function for cache Co-authored-by: Yossi Mosbacher <joe.mosbacher> Co-authored-by: Joran Angevaare <joranangevaare@gmail.com> Co-authored-by: Daniel Wenz <43881800+WenzDaniel@users.noreply.github.com> Co-authored-by: Joran Angevaare <jorana@nikhef.nl> * Add test for filter_kwargs (#837) Co-authored-by: Yossi Mosbacher <joe.mosbacher> * Update CorrectedAreas (instead of EnergyEstimates) (#817) * Update CorrectedAreas (instead of EnergyEstimates) * Changed CorrectedAreas and EnergyEstimates to URL configs * Added new fields cs2_wo_elifecorr and cs2_wo_time_corr * Using bodega for EnergyEstimates option * Extend URL configs and CMT Co-authored-by: Yossi Mosbacher <joe.mosbacher@gmail.com> Co-authored-by: Yossi Mosbacher <joe.mosbacher> Co-authored-by: Joran Angevaare <jorana@nikhef.nl> Co-authored-by: Daniel Wenz <43881800+WenzDaniel@users.noreply.github.com> * Fix codefactor issues (#832) Co-authored-by: Daniel Wenz <43881800+WenzDaniel@users.noreply.github.com> * use URL configs for NeuralNets (#821) * use URL configs for NeuralNets * placeholders * whoops * add test * review comments * small bug * fix tests * remove scaffolding * 100% COVERAGE :tada: * one line more * Update test_plugins.py * review * Update test_utils.py * fix tests and todos * Update tests/test_posrec_plugins.py * git scrambelled commit * Update url_config.py * Normalized line endings (#833) (#838) * Bump panel from 0.12.5 to 0.12.6 in /extra_requirements (#842) Bumps [panel](https://github.com/holoviz/panel) from 0.12.5 to 0.12.6. - [Release notes](https://github.com/holoviz/panel/releases) - [Changelog](https://github.com/holoviz/panel/blob/master/CHANGELOG.md) - [Commits](https://github.com/holoviz/panel/compare/v0.12.5...v0.12.6) --- updated-dependencies: - dependency-name: panel dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * Bump zstd from 1.5.0.2 to 1.5.0.4 in /extra_requirements (#844) Bumps [zstd](https://github.com/sergey-dryabzhinsky/python-zstd) from 1.5.0.2 to 1.5.0.4. - [Release notes](https://github.com/sergey-dryabzhinsky/python-zstd/releases) - [Commits](https://github.com/sergey-dryabzhinsky/python-zstd/compare/v1.5.0.2...v1.5.0.4) --- updated-dependencies: - dependency-name: zstd dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * Make v1 2 0 (#849) * Up history * Bump version: 1.1.3 → 1.2.0 * Bump hypothesis from 6.29.0 to 6.31.6 in /extra_requirements (#846) Bumps [hypothesis](https://github.com/HypothesisWorks/hypothesis) from 6.29.0 to 6.31.6. - [Release notes](https://github.com/HypothesisWorks/hypothesis/releases) - [Commits](https://github.com/HypothesisWorks/hypothesis/compare/hypothesis-python-6.29.0...hypothesis-python-6.31.6) --- updated-dependencies: - dependency-name: hypothesis dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * Bump xarray from 0.20.1 to 0.20.2 in /extra_requirements (#847) Bumps [xarray](https://github.com/pydata/xarray) from 0.20.1 to 0.20.2. - [Release notes](https://github.com/pydata/xarray/releases) - [Changelog](https://github.com/pydata/xarray/blob/main/HOW_TO_RELEASE.md) - [Commits](https://github.com/pydata/xarray/compare/v0.20.1...v0.20.2) --- updated-dependencies: - dependency-name: xarray dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * Bump wfsim from 0.5.11 to 0.5.12 in /extra_requirements (#843) Bumps [wfsim](https://github.com/XENONnT/wfsim) from 0.5.11 to 0.5.12. - [Release notes](https://github.com/XENONnT/wfsim/releases) - [Changelog](https://github.com/XENONnT/WFSim/blob/master/HISTORY.md) - [Commits](https://github.com/XENONnT/wfsim/compare/v0.5.11...v0.5.12) --- updated-dependencies: - dependency-name: wfsim dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * Bump dask from 2021.11.2 to 2021.12.0 in /extra_requirements (#841) Bumps [dask](https://github.com/dask/dask) from 2021.11.2 to 2021.12.0. - [Release notes](https://github.com/dask/dask/releases) - [Changelog](https://github.com/dask/dask/blob/main/docs/release-procedure.md) - [Commits](https://github.com/dask/dask/compare/2021.11.2...2021.12.0) --- updated-dependencies: - dependency-name: dask dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * Update requirements.txt (#852) * Bump scipy from 1.7.1 to 1.7.3 in /extra_requirements (#840) Bumps [scipy](https://github.com/scipy/scipy) from 1.7.1 to 1.7.3. - [Release notes](https://github.com/scipy/scipy/releases) - [Commits](https://github.com/scipy/scipy/compare/v1.7.1...v1.7.3) --- updated-dependencies: - dependency-name: scipy dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * Bump packaging from 20.8 to 21.3 in /extra_requirements (#845) Bumps [packaging](https://github.com/pypa/packaging) from 20.8 to 21.3. - [Release notes](https://github.com/pypa/packaging/releases) - [Changelog](https://github.com/pypa/packaging/blob/main/CHANGELOG.rst) - [Commits](https://github.com/pypa/packaging/compare/20.8...21.3) --- updated-dependencies: - dependency-name: packaging dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Joran Angevaare <jorana@nikhef.nl> * add read the docs config (#861) * add read the docs config * Update .readthedocs.yaml * one file * Pin documentation requirements (#862) * Add cmt tests and fix bug in apply_cmt_version (#860) * Add cmt tests and fix bug in apply_cmt_version * fix bug in url * Make dog happy * Add test for offline context * Skip offline text if no db * Implement Yossi's suggestion * Small typo in comment * just some bookkeeping * add comments Co-authored-by: Joran Angevaare <jorana@nikhef.nl> * new release * Bump version: 1.2.0 → 1.2.1 * Tests for `common.py` fix #741 (#856) * Fix common.py test * simplify * solve #741 * also load from mem * Update common.py * Add `strax.Context` documentation, fix #439 (#851) * fix #439 * fix source * Update build_context_doc.py * add bokeh to wiki test (#857) * Test for rucio-documents in the rundb (#858) * add test for rucio docs * revert change * fix comments * reduce testing time * one small test * Test for Mongo-down/uploader (#859) * add down/uploader tests * fix last line * Bump psutil from 5.8.0 to 5.9.0 in /extra_requirements (#872) Bumps [psutil](https://github.com/giampaolo/psutil) from 5.8.0 to 5.9.0. - [Release notes](https://github.com/giampaolo/psutil/releases) - [Changelog](https://github.com/giampaolo/psutil/blob/master/HISTORY.rst) - [Commits](https://github.com/giampaolo/psutil/compare/release-5.8.0...release-5.9.0) --- updated-dependencies: - dependency-name: psutil dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * Bump scikit-learn from 1.0.1 to 1.0.2 in /extra_requirements (#869) Bumps [scikit-learn](https://github.com/scikit-learn/scikit-learn) from 1.0.1 to 1.0.2. - [Release notes](https://github.com/scikit-learn/scikit-learn/releases) - [Commits](https://github.com/scikit-learn/scikit-learn/compare/1.0.1...1.0.2) --- updated-dependencies: - dependency-name: scikit-learn dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * Bump hypothesis from 6.31.6 to 6.34.1 in /extra_requirements (#868) Bumps [hypothesis](https://github.com/HypothesisWorks/hypothesis) from 6.31.6 to 6.34.1. - [Release notes](https://github.com/HypothesisWorks/hypothesis/releases) - [Commits](https://github.com/HypothesisWorks/hypothesis/compare/hypothesis-python-6.31.6...hypothesis-python-6.34.1) --- updated-dependencies: - dependency-name: hypothesis dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * Bump nbsphinx from 0.8.7 to 0.8.8 in /extra_requirements (#871) Bumps [nbsphinx](https://github.com/spatialaudio/nbsphinx) from 0.8.7 to 0.8.8. - [Release notes](https://github.com/spatialaudio/nbsphinx/releases) - [Changelog](https://github.com/spatialaudio/nbsphinx/blob/master/NEWS.rst) - [Commits](https://github.com/spatialaudio/nbsphinx/compare/0.8.7...0.8.8) --- updated-dependencies: - dependency-name: nbsphinx dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * Bump peaklets version (#873) * Bump peaklets version * Update peaklet_processing.py Co-authored-by: Joran Angevaare <jorana@nikhef.nl> * new version * Bump version: 1.2.1 → 1.2.2 * Bump numpy (#876) * Update requirements.txt * Update requirements.txt * Update requirements.txt * update test * typo * sort by alpha. * fix end * Update requirements-tests.txt * make new release for req. update * Bump version: 1.2.2 → 1.2.3 * fix action * Another WFSim `<->` CMT patch (#865) * just another hack for WFSim<3CMT * alternative suggestion * reveert * revert please * keep wfsim hack working as expected Co-authored-by: Yossi Mosbacher <joe.mosbacher> * introduce development branch * Tests for WFSim contexts (#855) * test for wfsim contexts * fix typo * how are you even supposed to pass these arguments?! * maybe this is the right syntax? Super convoluted.. * skip no db test * fix some leftovers * get ready for new release * Bump version: 1.2.3 → 1.2.4 * test with py3.10 (#878) * test with py3.10 * bump tf * Update pytest.yml * pin keras * fix test for wfsim * differently * Update pytest.yml * clean instructins * remove scaffolding * another try * simplify pandas * fix typo * skip HV * fix dtype * remove fixme error * bump numba (#880) * Tests for scada interface (#877) * Add additional tests * Add additional tests * Add additional tests * Update scada.py * add some more Co-authored-by: Joran R. Angevaare <jorana@nikhef.nl> * bumpversion * Bump version: 1.2.4 → 1.2.5 * Fix online monitor test (#882) * Update test_mongo_interactions.py * i love codefactor? * bumpversion * Bump version: 1.2.5 → 1.2.6 * fix typo * Delete update context collection (#883) * Delete update context collection * Delete create-utilix-config.sh * update zenodo * update github actions (#884) * URLConfig documentation (#863) * document urlconfigs * comment on URL argument order * change order Co-authored-by: Yossi Mosbacher <joe.mosbacher> Co-authored-by: Joran Angevaare <jorana@nikhef.nl> Co-authored-by: ahiguera-mx <ahiguera-mx@fried.rice.edu> Co-authored-by: Aaron Higuera <64651045+ahiguera-mx@users.noreply.github.com> Co-authored-by: Daniel Wenz <43881800+WenzDaniel@users.noreply.github.com> Co-authored-by: Shingo Kazama <kazama@isee.nagoya-u.ac.jp> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Evan Shockley <eshockley@physics.ucsd.edu> Co-authored-by: Shengchao Li <li4006@purdue.edu> Co-authored-by: Shengchao Li <scli@dali-login2.rcc.local> Co-authored-by: Kexin Liu <lkx21@mails.tsinghua.edu.cn> Co-authored-by: Kexin Liu <kexinliu@dali-login1.rcc.local> Co-authored-by: Tuan Khai Bui <82461188+tuankhaibui@users.noreply.github.com> Co-authored-by: Jianyu Long <38538701+Jianyu010@users.noreply.github.com> Co-authored-by: Jingqiang Ye <jyy2139@columbia.edu> Co-authored-by: Daniel Wenz <dwenz@kabelmail.de> Co-authored-by: Daniel Wenz <dwenz@students.uni-mainz.de> Co-authored-by: Luisa Hoetzsch <hoetzsch@mpi-hd.mpg.de> Co-authored-by: Luisa Hoetzsch <hoetzsch@dali-login1.rcc.local> Co-authored-by: Luisa Hoetzsch <luisa.hoetzsch@mpi-hd.mpg.de> Co-authored-by: Diego Ramírez García <diego.ramirez@physik.uni-freiburg.de> Co-authored-by: Giovanni Volta <38431109+GiovanniVolta@users.noreply.github.com> Co-authored-by: GiovanniVolta <gvolta@dali-login1.rcc.local> Co-authored-by: Johanna Jakob <56300925+jjakob03@users.noreply.github.com> Co-authored-by: Ricardo Peres <rperes@physik.uzh.ch> Co-authored-by: Lutz Althüser <account@l-althueser.de> Co-authored-by: Yossi Mosbacher <joe.mosbacher@gmail.com> Co-authored-by: Dacheng Xu <xdc17@mails.tsinghua.edu.cn> Co-authored-by: Dacheng Xu <xudctron@gmail.com> Co-authored-by: Knut Dundas Morå <kdm2160@columbia.edu> Co-authored-by: Yue Ma <3124558229@qq.com> Co-authored-by: Shenyang Shi <ss6109@columbia.edu> Co-authored-by: tianyu zhu <tz2263@columbia.edu>
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Jan 24, 2022
* Add NaN check * Add a custom exception for nan and add the check for all corrections * use pandas builtin functions as suggested in the review * Allow database to not be initialized (#636) * new plot_pmts (#637) * change plotting of dead pmts. Co-authored-by: GiovanniVolta <gvolta@dali-login1.rcc.local> Co-authored-by: Joran Angevaare <jorana@nikhef.nl> * First nVeto monitor plugin (#634) * I added first nVeto monitor plugin * Update straxen/plugins/online_monitor.py I modified as suggestion from @jorana Co-authored-by: Joran Angevaare <jorana@nikhef.nl> * Update straxen/plugins/online_monitor.py I modified as suggestion Co-authored-by: Joran Angevaare <jorana@nikhef.nl> * Update straxen/plugins/online_monitor.py I modified as suggestion Co-authored-by: Joran Angevaare <jorana@nikhef.nl> * Update straxen/plugins/online_monitor.py I modified as suggestion Co-authored-by: Joran Angevaare <jorana@nikhef.nl> * Update straxen/plugins/online_monitor.py I modified as suggestion at line 235 in new version Co-authored-by: Joran Angevaare <jorana@nikhef.nl> * Update online_monitor.py Update online_monitor.py with the * Add online_monitor_nv to contexts.py Add 'online_monitor_nv' at line 196 to contexts.py to produce data to monitor nVeto detector Co-authored-by: Joran Angevaare <jorana@nikhef.nl> * Speed up event pattern fit (#625) * Numbafy binomial_test * Small changes in neg2ll_modpoisson * fix bug on binomial test * update binomial test considering that the mean is not the maximum Co-authored-by: GiovanniVolta <gvolta@dali-login1.rcc.local> * Peak event veto tagging (#618) * Add peak and event veto tagging plugins + tests Co-authored-by: Joran Angevaare <jorana@nikhef.nl> * kwargs for saver (#639) * Add a plugin for external trigger run on nVeto calibration (#630) * Add a plugin for external trigger run on nVeto calibration plus tests Co-authored-by: Daniel Wenz <43881800+WenzDaniel@users.noreply.github.com> Co-authored-by: Joran Angevaare <jorana@nikhef.nl> * Fix veto event positions (#641) * Fixed floating point issue * Renamed function update test * bumped version Co-authored-by: Evan Shockley <eshockley@physics.ucsd.edu> * Fix peaklet area bias (#601) * Modified peaklet building to remove baseline bias * Forgot to updated desaturation * test * Fix record_i in overlapping peaks * Updated peaklets building according to change in strax * Minor fixes * Addressed some review dog comments. * Added test for new function * Fixed test * Add empty peaklets support * Update splitting inputs in veto plugins * Add time shift to get correct maximum * Update peaklet_processing.py * Rename startegy alias * Update straxen/plugins/peaklet_processing.py Co-authored-by: Joran Angevaare <jorana@nikhef.nl> * Change naming conventions * fix test Co-authored-by: Joran Angevaare <jorana@nikhef.nl> * Bump tensorflow from 2.5.0 to 2.5.1 in /extra_requirements (#643) Bumps [tensorflow](https://github.com/tensorflow/tensorflow) from 2.5.0 to 2.5.1. - [Release notes](https://github.com/tensorflow/tensorflow/releases) - [Changelog](https://github.com/tensorflow/tensorflow/blob/master/RELEASE.md) - [Commits](https://github.com/tensorflow/tensorflow/compare/v2.5.0...v2.5.1) --- updated-dependencies: - dependency-name: tensorflow dependency-type: direct:production ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * Add lone hit information to merged S2s. (#623) * Add lone hit information to merged S2s. * Copy lone hit as it is read only * Add dummy lone hits for he channel * Modify tests to avoid deadlock * Revert "Add dummy lone hits for he channel" This reverts commit 4710419151b33639e4cdf7349cfa9afb0b3e31cd. * Revert "Revert "Add dummy lone hits for he channel"" This reverts commit 4cbfb3c23d0da764bb967323fca0d6272f39b494. * Revert "Modify tests to avoid deadlock" This reverts commit 271e7cfdb8b1d2d605fa9fb885d2142db860555a. * Update straxen/plugins/peaklet_processing.py Co-authored-by: Joran Angevaare <jorana@nikhef.nl> Co-authored-by: Joran Angevaare <jorana@nikhef.nl> * Use rucio from straxen & nest RucioRemote imports (#592) * use nested imports for RucioRemote * use the right imports * fix none/import error * add simple test * test loading runs * if no utilix there is no sense in testing * make faster * test find * Update test_rucio.py * Update test_rucio.py * comment on the tests * Update test_rucio.py * Update README.md * create pre-release * Update requirements for strax (#644) * Update requirements for strax * Update pytest.yml * Update pytest.yml * Update pytest.yml * Update pytest.yml * Update pytest.yml * Update pytest.yml * Update pytest.yml * Update pytest.yml * Create filter_strax_from_requirements.sh * Update pytest.yml * Update pytest.yml * Delete preinstall_requirements.sh * Update requirements.txt * Fix n hits (#646) * Fixed +1 in n_hits * merge s2 without s1 (#645) Co-authored-by: Daniel Wenz <43881800+WenzDaniel@users.noreply.github.com> * Updated history * Bump version: '1.0.0-rc0' -> '1.0.0' (set str manually) * Use query by index * few tweaks from review * Bump tqdm from 4.62.0 to 4.62.2 in /extra_requirements (#658) Bumps [tqdm](https://github.com/tqdm/tqdm) from 4.62.0 to 4.62.2. - [Release notes](https://github.com/tqdm/tqdm/releases) - [Commits](https://github.com/tqdm/tqdm/compare/v4.62.0...v4.62.2) --- updated-dependencies: - dependency-name: tqdm dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * Bump dask from 2021.7.2 to 2021.8.1 in /extra_requirements (#657) Bumps [dask](https://github.com/dask/dask) from 2021.7.2 to 2021.8.1. - [Release notes](https://github.com/dask/dask/releases) - [Changelog](https://github.com/dask/dask/blob/main/docs/release-procedure.md) - [Commits](https://github.com/dask/dask/compare/2021.07.2...2021.08.1) --- updated-dependencies: - dependency-name: dask dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * Bump pandas from 1.2.5 to 1.3.2 in /extra_requirements (#653) Bumps [pandas](https://github.com/pandas-dev/pandas) from 1.2.5 to 1.3.2. - [Release notes](https://github.com/pandas-dev/pandas/releases) - [Changelog](https://github.com/pandas-dev/pandas/blob/master/RELEASE.md) - [Commits](https://github.com/pandas-dev/pandas/compare/v1.2.5...v1.3.2) --- updated-dependencies: - dependency-name: pandas dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * Bump hypothesis from 6.14.5 to 6.17.4 in /extra_requirements (#651) Bumps [hypothesis](https://github.com/HypothesisWorks/hypothesis) from 6.14.5 to 6.17.4. - [Release notes](https://github.com/HypothesisWorks/hypothesis/releases) - [Commits](https://github.com/HypothesisWorks/hypothesis/compare/hypothesis-python-6.14.5...hypothesis-python-6.17.4) --- updated-dependencies: - dependency-name: hypothesis dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * Bump matplotlib from 3.4.2 to 3.4.3 in /extra_requirements (#656) Bumps [matplotlib](https://github.com/matplotlib/matplotlib) from 3.4.2 to 3.4.3. - [Release notes](https://github.com/matplotlib/matplotlib/releases) - [Commits](https://github.com/matplotlib/matplotlib/compare/v3.4.2...v3.4.3) --- updated-dependencies: - dependency-name: matplotlib dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * Bump scipy from 1.7.0 to 1.7.1 in /extra_requirements (#647) Bumps [scipy](https://github.com/scipy/scipy) from 1.7.0 to 1.7.1. - [Release notes](https://github.com/scipy/scipy/releases) - [Commits](https://github.com/scipy/scipy/compare/v1.7.0...v1.7.1) --- updated-dependencies: - dependency-name: scipy dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * Bump jupyter-client from 6.1.12 to 7.0.2 in /extra_requirements (#649) Bumps [jupyter-client](https://github.com/jupyter/jupyter_client) from 6.1.12 to 7.0.2. - [Release notes](https://github.com/jupyter/jupyter_client/releases) - [Changelog](https://github.com/jupyter/jupyter_client/blob/master/CHANGELOG.md) - [Commits](https://github.com/jupyter/jupyter_client/compare/6.1.12...v7.0.2) --- updated-dependencies: - dependency-name: jupyter-client dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * Bump ipywidgets from 7.6.3 to 7.6.4 in /extra_requirements (#650) Bumps [ipywidgets](http://ipython.org) from 7.6.3 to 7.6.4. --- updated-dependencies: - dependency-name: ipywidgets dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * Bump tensorflow from 2.5.1 to 2.6.0 in /extra_requirements (#655) Bumps [tensorflow](https://github.com/tensorflow/tensorflow) from 2.5.1 to 2.6.0. - [Release notes](https://github.com/tensorflow/tensorflow/releases) - [Changelog](https://github.com/tensorflow/tensorflow/blob/master/RELEASE.md) - [Commits](https://github.com/tensorflow/tensorflow/compare/v2.5.1...v2.6.0) --- updated-dependencies: - dependency-name: tensorflow dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * Bump pytest from 6.2.4 to 6.2.5 in /extra_requirements (#654) Bumps [pytest](https://github.com/pytest-dev/pytest) from 6.2.4 to 6.2.5. - [Release notes](https://github.com/pytest-dev/pytest/releases) - [Changelog](https://github.com/pytest-dev/pytest/blob/main/CHANGELOG.rst) - [Commits](https://github.com/pytest-dev/pytest/compare/6.2.4...6.2.5) --- updated-dependencies: - dependency-name: pytest dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * Fix minianalyses from apply_selection (#666) * Fix minianalyses from apply_selection * Update mini_analysis.py * Add small feature for printing versions of git (#665) * add small feature for printing versions of git * allow detached heads * Update misc.py * Update bootstrax * Update test_misc.py * fix some warnings from testing (#667) * fix some warnings from testing * Update rundb.py * warn by default * import typing * Add posdiff plugin (#669) * Add posdiff plugin Co-authored-by: Shengchao Li <scli@dali-login2.rcc.local> Co-authored-by: Joran Angevaare <jorana@nikhef.nl> Co-authored-by: Evan Shockley <eshockley@physics.ucsd.edu> * Bump jupyter-client from 7.0.2 to 7.0.5 in /extra_requirements (#675) Bumps [jupyter-client](https://github.com/jupyter/jupyter_client) from 7.0.2 to 7.0.5. - [Release notes](https://github.com/jupyter/jupyter_client/releases) - [Changelog](https://github.com/jupyter/jupyter_client/blob/master/CHANGELOG.md) - [Commits](https://github.com/jupyter/jupyter_client/compare/v7.0.2...v7.0.5) --- updated-dependencies: - dependency-name: jupyter-client dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * Bump scikit-learn from 0.24.2 to 1.0 in /extra_requirements (#676) Bumps [scikit-learn](https://github.com/scikit-learn/scikit-learn) from 0.24.2 to 1.0. - [Release notes](https://github.com/scikit-learn/scikit-learn/releases) - [Commits](https://github.com/scikit-learn/scikit-learn/compare/0.24.2...1.0) --- updated-dependencies: - dependency-name: scikit-learn dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * Bump hypothesis from 6.17.4 to 6.23.1 in /extra_requirements (#680) Bumps [hypothesis](https://github.com/HypothesisWorks/hypothesis) from 6.17.4 to 6.23.1. - [Release notes](https://github.com/HypothesisWorks/hypothesis/releases) - [Commits](https://github.com/HypothesisWorks/hypothesis/compare/hypothesis-python-6.17.4...hypothesis-python-6.23.1) --- updated-dependencies: - dependency-name: hypothesis dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * use strax notebook pbar if applicible (#685) * Implement SDSC as a local RSE for Expanse (#687) * Implement SDSC for rucio frontend / local backend * Fix typo in comment * Update contexts.py (#673) * Skips superruns in rucio frontend (#689) * Skips superruns in rucio frontend Co-authored-by: Joran Angevaare <jorana@nikhef.nl> * Previous S2 Shadow Plugin draft (#664) * Plugin which computes S2 shadows Co-authored-by: Kexin Liu <kexinliu@dali-login1.rcc.local> Co-authored-by: Shingo Kazama <kazama@isee.nagoya-u.ac.jp> Co-authored-by: Daniel Wenz <43881800+WenzDaniel@users.noreply.github.com> * Warn about non-loadable loggers (#693) * Warn about non-loadable loggers * Update bootstrax * Add n saturated channels (#691) * Add n_saturated channels, makes peaklets explicit. * Extend tight coincidence by channels * Propagate info to peak basics * Bump peaklet versions * Bump peak_basics versions * Propagate information to event_baiscs and bump version. * Updated function call and return * Add test for tight coincidence * Some review dog things * Move buffer cleaning * Fixed field help Co-authored-by: Joran Angevaare <jorana@nikhef.nl> * add small tool to extract run comments from database (#692) * add small tool to extract run comments from database * fix review comments * Update misc.py * Update pytest.yml * Update online_monitor_nv to v0.0.3 (#696) * Added events_nv_area_per_chunk * updated S2 corrected area (#686) * updated S2 corrected area Co-authored-by: Jingqiang Ye <jyy2139@columbia.edu> Co-authored-by: Shingo Kazama <kazama@isee.nagoya-u.ac.jp> Co-authored-by: Joran Angevaare <jorana@nikhef.nl> Co-authored-by: Daniel Wenz <dwenz@kabelmail.de> * Use admix in straxen (#688) * Implement SDSC for rucio frontend / local backend * Fix typo in comment * Have RucioRemoteBackend select RSEs in smart way * Bug fix in cases where RucioLocalBackend is not appended to the backends list * Update straxen/rucio.py Co-authored-by: Joran Angevaare <jorana@nikhef.nl> * Use admix * Use admix now in remote plugin * Dont require admix * Update contexts.py and rucio.py to address Joran's comments * small tweaks to #688 * use strax#541 * fix bug * fix docstring Co-authored-by: Joran Angevaare <jorana@nikhef.nl> Co-authored-by: Daniel Wenz <43881800+WenzDaniel@users.noreply.github.com> * Add RunDb read/write-test (#695) * add read write test for rundb * cleanup * remove pprint * important if * review comments * fix non-utilx test * remove _list_available?? * hack utilix * hack it gooood * Version bump of hitlets (#690) * Version bump of hitlets * Changed path to new peak data Co-authored-by: Joran Angevaare <jorana@nikhef.nl> * Implemented channel range to support he channel plugins * Fix bug in rucio frontend (#699) * Make release v1 1 0 (#698) * Updated history * Bump version: 1.0.0 → 1.1.0 * Update test_database_frontends.py * ready for patch release * Bump version: 1.1.0 → 1.1.1 * Set default drift time as nan (#700) * change default drift time to nan * change drift time to float to avoid convert nan into integer * Test new numba (#702) * Revert auto inclusion of rucio remote #688 (#701) * Revert auto inclusion of rucio remote #688 * allow other frontends to have the data * Also don't mark things available if not allowed * Revert "Also don't mark things available if not allowed" This reverts commit d6fb67ad8c6338e4dc9a7773fd50549811f476e3. * Plugin for afterpulse processing (#549) * add plugin for APs Co-authored-by: Luisa Hoetzsch <hoetzsch@dali-login1.rcc.local> Co-authored-by: Luisa Hoetzsch <luisa.hoetzsch@mpi-hd.mpg.de> Co-authored-by: Joran Angevaare <jorana@nikhef.nl> Co-authored-by: Evan Shockley <eshockley@physics.ucsd.edu> Co-authored-by: Daniel Wenz <43881800+WenzDaniel@users.noreply.github.com> Co-authored-by: Shingo Kazama <kazama@isee.nagoya-u.ac.jp> * Refactor straxen tests (#703) * use a small test data file * Bump dask from 2021.8.1 to 2021.10.0 in /extra_requirements (#712) Bumps [dask](https://github.com/dask/dask) from 2021.8.1 to 2021.10.0. - [Release notes](https://github.com/dask/dask/releases) - [Changelog](https://github.com/dask/dask/blob/main/docs/release-procedure.md) - [Commits](https://github.com/dask/dask/compare/2021.08.1...2021.10.0) --- updated-dependencies: - dependency-name: dask dependency-type: direct:production ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * fix bug in CMT (#710) * fix bug in CMT * remove nv&mv chaining plugins * Revert "remove nv&mv chaining plugins" This reverts commit 08bb8f434a4658d117adca8c4393d70f2ce41546. * Fix one year querries (#711) * Fix querries which last longer than one year * Changed querring to support >1 year queries * Reviewdog comments Co-authored-by: Joran Angevaare <jorana@nikhef.nl> * small codefactor patch (#714) * test nv with nv data (#709) * test nv with nv data * remove tagging plugins * test them here * Update test_utils.py * Update test_nveto_recorder.py * WFSim registry as argument for simulations context (#713) * WFSim registry as argument for sims context * Copypasting Joran's function * Shame on me * use new func Co-authored-by: Joran Angevaare <jorana@nikhef.nl> * Veto monitor (#707) * add data kinds to monitor neutron and muon Veto add online_monitor_nv and online_monitor_mv * Update contexts.py * Update online_monitor.py * Update contexts.py * Update online_monitor.py I update OnlineMonitorNV (to v.0.0.4) and OnlineMonitorMV. OnlineMonitorMV is a child plugin of OnlineMonitorNV. * Update contexts.py * Update online_monitor.py * Update online_monitor.py * small editorial changes Co-authored-by: Daniel Wenz <43881800+WenzDaniel@users.noreply.github.com> Co-authored-by: Joran Angevaare <jorana@nikhef.nl> * Update S1 AFT map in event pattern fit (#697) * Update S1 AFT map in event pattern fit * Update event_patternfit.py * test s1 aft map unity * Update test_utils.py * Update test_utils.py Co-authored-by: GiovanniVolta <gvolta@dali-login1.rcc.local> Co-authored-by: Joran Angevaare <jorana@nikhef.nl> * Refactor s2 correction (#704) * refactor fields for correctedareas * add corrected s2 with s2xy correction only * fix dtype * use infer_dtype * remove redundant variables * remove elife_corr from infer_dtype * line break after operator * use strax.to_str_tuple * remove cs2_bottom_wo_elifecorr * fix bug Co-authored-by: Joran Angevaare <jorana@nikhef.nl> * Unify CMT call in contexts (#717) Co-authored-by: Joran Angevaare <jorana@nikhef.nl> * Remove old bootstrax argument * add small test for wfsim (#716) * Update test_contexts.py * Update requirements-tests.txt * Update test_contexts.py * Update pytest.yml * Update pytest.yml * Update pytest.yml * Update pytest.yml * Update pytest.yml * this is so confusing * Update pytest.yml * Update test_contexts.py * Update test_contexts.py * Update pytest.yml * Update requirements.txt * Update requirements-tests.txt * new version * Bump version: 1.1.1 → 1.1.2 * Track typing_extensions==3.7.4.3 (#722) * Process afterpulses on ebs (#727) * Update test_misc.py * test_widgets is broken? (#726) * test_widgets is broken? * Update test_misc.py * Update test_misc.py * Bump scikit-learn from 1.0 to 1.0.1 in /extra_requirements (#737) Bumps [scikit-learn](https://github.com/scikit-learn/scikit-learn) from 1.0 to 1.0.1. - [Release notes](https://github.com/scikit-learn/scikit-learn/releases) - [Commits](https://github.com/scikit-learn/scikit-learn/compare/1.0...1.0.1) --- updated-dependencies: - dependency-name: scikit-learn dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Joran Angevaare <jorana@nikhef.nl> * Bump utilix from 0.6.1 to 0.6.5 in /extra_requirements (#736) Bumps [utilix](https://github.com/XENONnT/utilix) from 0.6.1 to 0.6.5. - [Release notes](https://github.com/XENONnT/utilix/releases) - [Changelog](https://github.com/XENONnT/utilix/blob/master/HISTORY.md) - [Commits](https://github.com/XENONnT/utilix/compare/v0.6.1...v0.6.5) --- updated-dependencies: - dependency-name: utilix dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Joran Angevaare <jorana@nikhef.nl> * Bump jupyter-client from 7.0.5 to 7.0.6 in /extra_requirements (#734) Bumps [jupyter-client](https://github.com/jupyter/jupyter_client) from 7.0.5 to 7.0.6. - [Release notes](https://github.com/jupyter/jupyter_client/releases) - [Changelog](https://github.com/jupyter/jupyter_client/blob/master/CHANGELOG.md) - [Commits](https://github.com/jupyter/jupyter_client/compare/v7.0.5...v7.0.6) --- updated-dependencies: - dependency-name: jupyter-client dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Joran Angevaare <jorana@nikhef.nl> * Bump flake8 from 3.9.2 to 4.0.1 in /extra_requirements (#730) Bumps [flake8](https://github.com/pycqa/flake8) from 3.9.2 to 4.0.1. - [Release notes](https://github.com/pycqa/flake8/releases) - [Commits](https://github.com/pycqa/flake8/compare/3.9.2...4.0.1) --- updated-dependencies: - dependency-name: flake8 dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Joran Angevaare <jorana@nikhef.nl> * Bump blosc from 1.10.4 to 1.10.6 in /extra_requirements (#728) Bumps [blosc](https://github.com/blosc/python-blosc) from 1.10.4 to 1.10.6. - [Release notes](https://github.com/blosc/python-blosc/releases) - [Changelog](https://github.com/Blosc/python-blosc/blob/master/RELEASE_NOTES.rst) - [Commits](https://github.com/blosc/python-blosc/compare/v1.10.4...v1.10.6) --- updated-dependencies: - dependency-name: blosc dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Joran Angevaare <jorana@nikhef.nl> * Fix deprecation warning (#723) * Bump pytest-cov from 2.12.1 to 3.0.0 in /extra_requirements (#732) Bumps [pytest-cov](https://github.com/pytest-dev/pytest-cov) from 2.12.1 to 3.0.0. - [Release notes](https://github.com/pytest-dev/pytest-cov/releases) - [Changelog](https://github.com/pytest-dev/pytest-cov/blob/master/CHANGELOG.rst) - [Commits](https://github.com/pytest-dev/pytest-cov/compare/v2.12.1...v3.0.0) --- updated-dependencies: - dependency-name: pytest-cov dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * Bump hypothesis from 6.23.1 to 6.24.1 in /extra_requirements (#738) Bumps [hypothesis](https://github.com/HypothesisWorks/hypothesis) from 6.23.1 to 6.24.1. - [Release notes](https://github.com/HypothesisWorks/hypothesis/releases) - [Commits](https://github.com/HypothesisWorks/hypothesis/compare/hypothesis-python-6.23.1...hypothesis-python-6.24.1) --- updated-dependencies: - dependency-name: hypothesis dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Joran Angevaare <jorana@nikhef.nl> * Test installation without extra requirements (#725) * Test installation without extra requirements * Update requirements.txt * Update requirements.txt * Update requirements.txt * Update requirements.txt * Update requirements.txt * Update requirements.txt * Update requirements.txt * Update requirements.txt * Update requirements.txt * Update requirements-tests.txt (#739) * Fix history * Add a few special cases (#740) * Add a few special cases The renaming for variables starting with cs1/cs2 is made via explicitly written special cases. Those were not updated for a few added fields. * corrected syntax error * Increment plugin version Co-authored-by: Joran Angevaare <jorana@nikhef.nl> * Remove RuntimeError in RucioFrontend (#719) * Add try except for rucio frontend * remove runtime error in rucio Co-authored-by: Joran Angevaare <jorana@nikhef.nl> * use alt z for alternative s1 binomial test (#724) * use alt z for alternative s1 binomial test Co-authored-by: GiovanniVolta <gvolta@dali-login1.rcc.local> Co-authored-by: Joran Angevaare <jorana@nikhef.nl> * Add zenodo (#742) * Add zenodo * Update README.md * Fix keras requirement (#748) * Bump tensorflow from 2.6.0 to 2.6.1 in /extra_requirements (#752) Bumps [tensorflow](https://github.com/tensorflow/tensorflow) from 2.6.0 to 2.6.1. - [Release notes](https://github.com/tensorflow/tensorflow/releases) - [Changelog](https://github.com/tensorflow/tensorflow/blob/master/RELEASE.md) - [Commits](https://github.com/tensorflow/tensorflow/compare/v2.6.0...v2.6.1) --- updated-dependencies: - dependency-name: tensorflow dependency-type: direct:production ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * update docs (#743) * update docs * typo * Set check_broken=False for RucioFrontend.find (#749) Co-authored-by: Joran Angevaare <jorana@nikhef.nl> * Added resource exception (#755) * Added resource exception * Add perpendicular wires handling info and function (#756) * Add perpendicular wires handling info and function Co-authored-by: Daniel Wenz <43881800+WenzDaniel@users.noreply.github.com> * Track bokeh (#759) * Track bokeh * Update requirements-tests.txt * Adding code comments for corrected z position (#763) * Small fix in definition of buffer (#760) * Small fix in definition of buffer * Reactivate scada test (#764) * Reactivate scada * Trigger new run https://xenonnt.slack.com/archives/C016UJZ090B/p1637148920183500 * Update test_scada.py * Revert "Small fix in definition of buffer (#760)" (#766) This reverts commit fd34198df065f18a003dbb09c4b7589cd9ba1a5b. * cleanup bootstrax logic for target determiniation (#768) * cleanup bootstrax logic * just in case one uses capital letters * Add URL based configs (#758) * add optional pyroscope profiling * add URLConfig and basic protocol implementations * Update straxen/url_config.py Co-authored-by: Joran Angevaare <joranangevaare@gmail.com> * undo accidental change to bootstrax * docstring and explicit exeption catch * Update straxen/url_config.py Co-authored-by: Joran Angevaare <joranangevaare@gmail.com> Co-authored-by: Yossi Mosbacher <joe.mosbacher> Co-authored-by: Joran Angevaare <joranangevaare@gmail.com> Co-authored-by: Daniel Wenz <43881800+WenzDaniel@users.noreply.github.com> Co-authored-by: Joran Angevaare <jorana@nikhef.nl> * Explicitly set infer_dtype=False for all Options (#750) * add infer_dtype to all options * rename infer_dtype to infer_type * pin strax version since not backward compatible Co-authored-by: Yossi Mosbacher <joe.mosbacher> Co-authored-by: Joran Angevaare <jorana@nikhef.nl> * new release * Bump version: 1.1.2 → 1.1.3 * Update bootstrax * Implement peak-level shadow and event-level shadow refactor (#753) * Add PeakShadow plugin. * Separate event shadow and peak shadow Co-authored-by: chnlkx <lkx21@mails.tsinghua.edu.cn> * Bump supercharge/mongodb-github-action from 1.6.0 to 1.7.0 (#771) Bumps [supercharge/mongodb-github-action](https://github.com/supercharge/mongodb-github-action) from 1.6.0 to 1.7.0. - [Release notes](https://github.com/supercharge/mongodb-github-action/releases) - [Changelog](https://github.com/supercharge/mongodb-github-action/blob/main/CHANGELOG.md) - [Commits](https://github.com/supercharge/mongodb-github-action/compare/1.6.0...1.7.0) --- updated-dependencies: - dependency-name: supercharge/mongodb-github-action dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * Add main peaks' shadow for event shadow (#770) * Add main peaks' shadow for event shadow Co-authored-by: Daniel Wenz <43881800+WenzDaniel@users.noreply.github.com> * Cache dependencies (#772) * cache dependencies * Update pytest.yml * Update contexts.yml * order events * Bump wfsim tests (#773) * wipe the online monitor * Revert "wipe the online monitor" This reverts commit a945e75725c40d7661f90cb3032d20f15175d18d. * whipe online monitor data (#777) * whipe online monitor data * rever pycharm nonsense * revert it more * pycharm doesn't even allow me to copy past it back * Pin pymongo (#801) * Bump packaging from 20.8 to 21.3 in /extra_requirements (#794) Bumps [packaging](https://github.com/pypa/packaging) from 20.8 to 21.3. - [Release notes](https://github.com/pypa/packaging/releases) - [Changelog](https://github.com/pypa/packaging/blob/main/CHANGELOG.rst) - [Commits](https://github.com/pypa/packaging/compare/20.8...21.3) --- updated-dependencies: - dependency-name: packaging dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * Bump xarray from 0.19.0 to 0.20.1 in /extra_requirements (#799) Bumps [xarray](https://github.com/pydata/xarray) from 0.19.0 to 0.20.1. - [Release notes](https://github.com/pydata/xarray/releases) - [Changelog](https://github.com/pydata/xarray/blob/main/HOW_TO_RELEASE.md) - [Commits](https://github.com/pydata/xarray/compare/v0.19.0...v0.20.1) --- updated-dependencies: - dependency-name: xarray dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Joran Angevaare <jorana@nikhef.nl> * Bump wfsim from 0.5.10 to 0.5.11 in /extra_requirements (#798) Bumps [wfsim](https://github.com/XENONnT/wfsim) from 0.5.10 to 0.5.11. - [Release notes](https://github.com/XENONnT/wfsim/releases) - [Changelog](https://github.com/XENONnT/WFSim/blob/master/HISTORY.md) - [Commits](https://github.com/XENONnT/wfsim/compare/v0.5.10...v0.5.11) --- updated-dependencies: - dependency-name: wfsim dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Joran Angevaare <jorana@nikhef.nl> * Bump hypothesis from 6.24.1 to 6.29.0 in /extra_requirements (#797) Bumps [hypothesis](https://github.com/HypothesisWorks/hypothesis) from 6.24.1 to 6.29.0. - [Release notes](https://github.com/HypothesisWorks/hypothesis/releases) - [Commits](https://github.com/HypothesisWorks/hypothesis/compare/hypothesis-python-6.24.1...hypothesis-python-6.29.0) --- updated-dependencies: - dependency-name: hypothesis dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Joran Angevaare <jorana@nikhef.nl> * Bump dask from 2021.10.0 to 2021.11.2 in /extra_requirements (#786) Bumps [dask](https://github.com/dask/dask) from 2021.10.0 to 2021.11.2. - [Release notes](https://github.com/dask/dask/releases) - [Changelog](https://github.com/dask/dask/blob/main/docs/release-procedure.md) - [Commits](https://github.com/dask/dask/compare/2021.10.0...2021.11.2) --- updated-dependencies: - dependency-name: dask dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Joran Angevaare <jorana@nikhef.nl> * Bump coveralls from 3.2.0 to 3.3.1 in /extra_requirements (#789) Bumps [coveralls](https://github.com/TheKevJames/coveralls-python) from 3.2.0 to 3.3.1. - [Release notes](https://github.com/TheKevJames/coveralls-python/releases) - [Changelog](https://github.com/TheKevJames/coveralls-python/blob/master/CHANGELOG.md) - [Commits](https://github.com/TheKevJames/coveralls-python/compare/3.2.0...3.3.1) --- updated-dependencies: - dependency-name: coveralls dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Joran Angevaare <jorana@nikhef.nl> * specified wfsim twice * Bump jupyter-client from 7.0.6 to 7.1.0 in /extra_requirements (#788) Bumps [jupyter-client](https://github.com/jupyter/jupyter_client) from 7.0.6 to 7.1.0. - [Release notes](https://github.com/jupyter/jupyter_client/releases) - [Changelog](https://github.com/jupyter/jupyter_client/blob/master/CHANGELOG.md) - [Commits](https://github.com/jupyter/jupyter_client/compare/v7.0.6...v7.1.0) --- updated-dependencies: - dependency-name: jupyter-client dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Joran Angevaare <jorana@nikhef.nl> * Bump coverage from 5.5 to 6.2 in /extra_requirements (#790) Bumps [coverage](https://github.com/nedbat/coveragepy) from 5.5 to 6.2. - [Release notes](https://github.com/nedbat/coveragepy/releases) - [Changelog](https://github.com/nedbat/coveragepy/blob/master/CHANGES.rst) - [Commits](https://github.com/nedbat/coveragepy/compare/coverage-5.5...6.2) --- updated-dependencies: - dependency-name: coverage dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Joran Angevaare <jorana@nikhef.nl> * Add refactor event building cut (#778) * Move le/re into setup for event building cut. * Add comment * Remove whitespace * Add types to plugin * Matplotlib changed requirements (#805) * fix shadow plugins * move to peaks/events * address review * make static * issue with the requirements? * URLConfig not in strax (#781) * URLConfig not in strax * add import to package init * add tests for URLConfig * replace deprecates pymongo Cursor.count * skip cmt test if utilix not configured * require pymongo<=3.12.0 to avoid breaking changes * add md5 to file documents for pymongo 4.0 support * add protocol description method * SecondaryPreferred read preference for OM tests * Update requirements-tests.txt * test fsspec protocol * formatting * fix typos and print_protocols-dummy test * add type hints to protocols Co-authored-by: Yossi Mosbacher <joe.mosbacher> Co-authored-by: Joran Angevaare <jorana@nikhef.nl> Co-authored-by: Yossi Mosbacher <joe.mosbacher@gmail.com> * Revert "URLConfig not in strax (#781)" (#807) This reverts commit b5f3d99344fe9f46eec8126338afce99fed92168. * Fix #781 (#808) * can we disable codefactor please (#809) * Update bokeh, panel, tensorflow and keras (#796) * Bump bokeh from 2.3.3 to 2.4.2 in /extra_requirements Bumps [bokeh](https://github.com/bokeh/bokeh) from 2.3.3 to 2.4.2. - [Release notes](https://github.com/bokeh/bokeh/releases) - [Changelog](https://github.com/bokeh/bokeh/blob/branch-3.0/CHANGELOG) - [Commits](https://github.com/bokeh/bokeh/compare/2.3.3...2.4.2) --- updated-dependencies: - dependency-name: bokeh dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <support@github.com> * Update requirements-tests.txt * Update requirements-tests.txt * Update requirements-tests.txt * Update bokeh_waveform_plot.py Co-authored-by: Joran Angevaare <jorana@nikhef.nl> * Loose packaging requirement (#810) * Exclude S1 as triggering peak (#779) Co-authored-by: Shingo Kazama <kazama@isee.nagoya-u.ac.jp> Co-authored-by: Jingqiang Ye <jyy2139@columbia.edu> * fix dep. order * sort alphabetically * Restore #760 Patch peaks merging (#767) * Update definition array_valued (#757) * use channel tight coincidence level (#745) Co-authored-by: Evan Shockley <eshockley@physics.ucsd.edu> Co-authored-by: Shingo Kazama <kazama@isee.nagoya-u.ac.jp> Co-authored-by: Daniel Wenz <43881800+WenzDaniel@users.noreply.github.com> * Two manual boundaries (updated 11/24/2021) (#775) Updates classification boundaries for S1 and Se * S2 pattern fit (#780) * add neural tensorflow method chi2 * Revert "Update definition array_valued (#757)" (#812) This reverts commit 23e4eacb4191ae3444df2bdd483795bd93b28026. * Itp test (#813) * can we disable codefactor please * add itp test * Events synchronize (#761) *Add preliminary plugin for synchronized time stamps * Performance update for binomial test (#783) * update binom test * Fix broken matplotlib/minianalyses (#815) * fix broken matplotlib * fix some tests * update tests * remove asserts * Update test_mini_analyses.py * fix multihist syntax * Update matplotlib_utils.py * Update straxen/analyses/bokeh_waveform_plot.py * Update straxen/analyses/bokeh_waveform_plot.py * Update straxen/analyses/bokeh_waveform_plot.py * Update straxen/analyses/bokeh_waveform_plot.py * Update straxen/analyses/bokeh_waveform_plot.py * Update straxen/analyses/bokeh_waveform_plot.py * Update straxen/analyses/bokeh_waveform_plot.py * Update straxen/analyses/bokeh_waveform_plot.py * Update straxen/analyses/holoviews_waveform_display.py * Update straxen/analyses/posrec_comparison.py * Update straxen/analyses/posrec_comparison.py * Update straxen/analyses/posrec_comparison.py * Update straxen/analyses/posrec_comparison.py * Update straxen/analyses/bokeh_waveform_plot.py * Update straxen/analyses/bokeh_waveform_plot.py * Update straxen/analyses/bokeh_waveform_plot.py * fix codefactor * sorry sorry for this mess * assert is inverted * this is not log * fix more bugs * deprecate tight layout * add docs * review comments * stupid typo * Remove codefactor (#818) https://xenonnt.slack.com/archives/C016UJZ090B/p1639500799304900 * Rename tight coincidence (#825) * Rename tight coincidence -> tight_coincidence channel, remove previous tight coincidence. * Update help * Remove field * Remove n_hits computation * Update the test * URLConfig take protocol for nested keys (#826) * adjust take protocol for lists * one more test, thanks Yossi Co-authored-by: Yossi Mosbacher <joe.mosbacher> Co-authored-by: Joran Angevaare <jorana@nikhef.nl> * Restore #757 (#814) Co-authored-by: Johanna Jakob <56300925+jjakob03@users.noreply.github.com> Co-authored-by: Daniel Wenz <43881800+WenzDaniel@users.noreply.github.com> Co-authored-by: tianyu zhu <tz2263@columbia.edu> * Bump wemake-services/wemake-python-styleguide from 0.15.3 to 0.16.0 (#829) Bumps [wemake-services/wemake-python-styleguide](https://github.com/wemake-services/wemake-python-styleguide) from 0.15.3 to 0.16.0. - [Release notes](https://github.com/wemake-services/wemake-python-styleguide/releases) - [Changelog](https://github.com/wemake-services/wemake-python-styleguide/blob/master/CHANGELOG.md) - [Commits](https://github.com/wemake-services/wemake-python-styleguide/compare/0.15.3...0.16.0) --- updated-dependencies: - dependency-name: wemake-services/wemake-python-styleguide dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * Unittest for DAQreader (#828) * add daq_reader_test * add review comments * remove the erease option, it absolutely is one big horrible idea * fix review comments * Fix nv testing data (#830) * Another try at codefactor (#831) Let's give it another try, other tools have their own issues too * Move URLConfig cache to global dictionary (#822) * Adds size_of function for cache Co-authored-by: Yossi Mosbacher <joe.mosbacher> Co-authored-by: Joran Angevaare <joranangevaare@gmail.com> Co-authored-by: Daniel Wenz <43881800+WenzDaniel@users.noreply.github.com> Co-authored-by: Joran Angevaare <jorana@nikhef.nl> * Add test for filter_kwargs (#837) Co-authored-by: Yossi Mosbacher <joe.mosbacher> * Update CorrectedAreas (instead of EnergyEstimates) (#817) * Update CorrectedAreas (instead of EnergyEstimates) * Changed CorrectedAreas and EnergyEstimates to URL configs * Added new fields cs2_wo_elifecorr and cs2_wo_time_corr * Using bodega for EnergyEstimates option * Extend URL configs and CMT Co-authored-by: Yossi Mosbacher <joe.mosbacher@gmail.com> Co-authored-by: Yossi Mosbacher <joe.mosbacher> Co-authored-by: Joran Angevaare <jorana@nikhef.nl> Co-authored-by: Daniel Wenz <43881800+WenzDaniel@users.noreply.github.com> * Fix codefactor issues (#832) Co-authored-by: Daniel Wenz <43881800+WenzDaniel@users.noreply.github.com> * use URL configs for NeuralNets (#821) * use URL configs for NeuralNets * placeholders * whoops * add test * review comments * small bug * fix tests * remove scaffolding * 100% COVERAGE :tada: * one line more * Update test_plugins.py * review * Update test_utils.py * fix tests and todos * Update tests/test_posrec_plugins.py * git scrambelled commit * Update url_config.py * Normalized line endings (#833) (#838) * Bump panel from 0.12.5 to 0.12.6 in /extra_requirements (#842) Bumps [panel](https://github.com/holoviz/panel) from 0.12.5 to 0.12.6. - [Release notes](https://github.com/holoviz/panel/releases) - [Changelog](https://github.com/holoviz/panel/blob/master/CHANGELOG.md) - [Commits](https://github.com/holoviz/panel/compare/v0.12.5...v0.12.6) --- updated-dependencies: - dependency-name: panel dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * Bump zstd from 1.5.0.2 to 1.5.0.4 in /extra_requirements (#844) Bumps [zstd](https://github.com/sergey-dryabzhinsky/python-zstd) from 1.5.0.2 to 1.5.0.4. - [Release notes](https://github.com/sergey-dryabzhinsky/python-zstd/releases) - [Commits](https://github.com/sergey-dryabzhinsky/python-zstd/compare/v1.5.0.2...v1.5.0.4) --- updated-dependencies: - dependency-name: zstd dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * Make v1 2 0 (#849) * Up history * Bump version: 1.1.3 → 1.2.0 * Bump hypothesis from 6.29.0 to 6.31.6 in /extra_requirements (#846) Bumps [hypothesis](https://github.com/HypothesisWorks/hypothesis) from 6.29.0 to 6.31.6. - [Release notes](https://github.com/HypothesisWorks/hypothesis/releases) - [Commits](https://github.com/HypothesisWorks/hypothesis/compare/hypothesis-python-6.29.0...hypothesis-python-6.31.6) --- updated-dependencies: - dependency-name: hypothesis dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * Bump xarray from 0.20.1 to 0.20.2 in /extra_requirements (#847) Bumps [xarray](https://github.com/pydata/xarray) from 0.20.1 to 0.20.2. - [Release notes](https://github.com/pydata/xarray/releases) - [Changelog](https://github.com/pydata/xarray/blob/main/HOW_TO_RELEASE.md) - [Commits](https://github.com/pydata/xarray/compare/v0.20.1...v0.20.2) --- updated-dependencies: - dependency-name: xarray dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * Bump wfsim from 0.5.11 to 0.5.12 in /extra_requirements (#843) Bumps [wfsim](https://github.com/XENONnT/wfsim) from 0.5.11 to 0.5.12. - [Release notes](https://github.com/XENONnT/wfsim/releases) - [Changelog](https://github.com/XENONnT/WFSim/blob/master/HISTORY.md) - [Commits](https://github.com/XENONnT/wfsim/compare/v0.5.11...v0.5.12) --- updated-dependencies: - dependency-name: wfsim dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * Bump dask from 2021.11.2 to 2021.12.0 in /extra_requirements (#841) Bumps [dask](https://github.com/dask/dask) from 2021.11.2 to 2021.12.0. - [Release notes](https://github.com/dask/dask/releases) - [Changelog](https://github.com/dask/dask/blob/main/docs/release-procedure.md) - [Commits](https://github.com/dask/dask/compare/2021.11.2...2021.12.0) --- updated-dependencies: - dependency-name: dask dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * Update requirements.txt (#852) * Bump scipy from 1.7.1 to 1.7.3 in /extra_requirements (#840) Bumps [scipy](https://github.com/scipy/scipy) from 1.7.1 to 1.7.3. - [Release notes](https://github.com/scipy/scipy/releases) - [Commits](https://github.com/scipy/scipy/compare/v1.7.1...v1.7.3) --- updated-dependencies: - dependency-name: scipy dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * Bump packaging from 20.8 to 21.3 in /extra_requirements (#845) Bumps [packaging](https://github.com/pypa/packaging) from 20.8 to 21.3. - [Release notes](https://github.com/pypa/packaging/releases) - [Changelog](https://github.com/pypa/packaging/blob/main/CHANGELOG.rst) - [Commits](https://github.com/pypa/packaging/compare/20.8...21.3) --- updated-dependencies: - dependency-name: packaging dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Joran Angevaare <jorana@nikhef.nl> * add read the docs config (#861) * add read the docs config * Update .readthedocs.yaml * one file * Pin documentation requirements (#862) * Add cmt tests and fix bug in apply_cmt_version (#860) * Add cmt tests and fix bug in apply_cmt_version * fix bug in url * Make dog happy * Add test for offline context * Skip offline text if no db * Implement Yossi's suggestion * Small typo in comment * just some bookkeeping * add comments Co-authored-by: Joran Angevaare <jorana@nikhef.nl> * new release * Bump version: 1.2.0 → 1.2.1 * Tests for `common.py` fix #741 (#856) * Fix common.py test * simplify * solve #741 * also load from mem * Update common.py * Add `strax.Context` documentation, fix #439 (#851) * fix #439 * fix source * Update build_context_doc.py * add bokeh to wiki test (#857) * Test for rucio-documents in the rundb (#858) * add test for rucio docs * revert change * fix comments * reduce testing time * one small test * Test for Mongo-down/uploader (#859) * add down/uploader tests * fix last line * Bump psutil from 5.8.0 to 5.9.0 in /extra_requirements (#872) Bumps [psutil](https://github.com/giampaolo/psutil) from 5.8.0 to 5.9.0. - [Release notes](https://github.com/giampaolo/psutil/releases) - [Changelog](https://github.com/giampaolo/psutil/blob/master/HISTORY.rst) - [Commits](https://github.com/giampaolo/psutil/compare/release-5.8.0...release-5.9.0) --- updated-dependencies: - dependency-name: psutil dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * Bump scikit-learn from 1.0.1 to 1.0.2 in /extra_requirements (#869) Bumps [scikit-learn](https://github.com/scikit-learn/scikit-learn) from 1.0.1 to 1.0.2. - [Release notes](https://github.com/scikit-learn/scikit-learn/releases) - [Commits](https://github.com/scikit-learn/scikit-learn/compare/1.0.1...1.0.2) --- updated-dependencies: - dependency-name: scikit-learn dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * Bump hypothesis from 6.31.6 to 6.34.1 in /extra_requirements (#868) Bumps [hypothesis](https://github.com/HypothesisWorks/hypothesis) from 6.31.6 to 6.34.1. - [Release notes](https://github.com/HypothesisWorks/hypothesis/releases) - [Commits](https://github.com/HypothesisWorks/hypothesis/compare/hypothesis-python-6.31.6...hypothesis-python-6.34.1) --- updated-dependencies: - dependency-name: hypothesis dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * Bump nbsphinx from 0.8.7 to 0.8.8 in /extra_requirements (#871) Bumps [nbsphinx](https://github.com/spatialaudio/nbsphinx) from 0.8.7 to 0.8.8. - [Release notes](https://github.com/spatialaudio/nbsphinx/releases) - [Changelog](https://github.com/spatialaudio/nbsphinx/blob/master/NEWS.rst) - [Commits](https://github.com/spatialaudio/nbsphinx/compare/0.8.7...0.8.8) --- updated-dependencies: - dependency-name: nbsphinx dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * Bump peaklets version (#873) * Bump peaklets version * Update peaklet_processing.py Co-authored-by: Joran Angevaare <jorana@nikhef.nl> * new version * Bump version: 1.2.1 → 1.2.2 * Bump numpy (#876) * Update requirements.txt * Update requirements.txt * Update requirements.txt * update test * typo * sort by alpha. * fix end * Update requirements-tests.txt * make new release for req. update * Bump version: 1.2.2 → 1.2.3 * fix action * Another WFSim `<->` CMT patch (#865) * just another hack for WFSim<3CMT * alternative suggestion * reveert * revert please * keep wfsim hack working as expected Co-authored-by: Yossi Mosbacher <joe.mosbacher> * introduce development branch * Tests for WFSim contexts (#855) * test for wfsim contexts * fix typo * how are you even supposed to pass these arguments?! * maybe this is the right syntax? Super convoluted.. * skip no db test * fix some leftovers * get ready for new release * Bump version: 1.2.3 → 1.2.4 * test with py3.10 (#878) * test with py3.10 * bump tf * Update pytest.yml * pin keras * fix test for wfsim * differently * Update pytest.yml * clean instructins * remove scaffolding * another try * simplify pandas * fix typo * skip HV * fix dtype * remove fixme error * bump numba (#880) * Tests for scada interface (#877) * Add additional tests * Add additional tests * Add additional tests * Update scada.py * add some more Co-authored-by: Joran R. Angevaare <jorana@nikhef.nl> * bumpversion * Bump version: 1.2.4 → 1.2.5 * Fix online monitor test (#882) * Update test_mongo_interactions.py * i love codefactor? * bumpversion * Bump version: 1.2.5 → 1.2.6 * fix typo * Delete update context collection (#883) * Delete update context collection * Delete create-utilix-config.sh * update zenodo * update github actions (#884) * URLConfig documentation (#863) * document urlconfigs * comment on URL argument order * change order Co-authored-by: Yossi Mosbacher <joe.mosbacher> Co-authored-by: Joran Angevaare <jorana@nikhef.nl> Co-authored-by: ahiguera-mx <ahiguera-mx@fried.rice.edu> Co-authored-by: Aaron Higuera <64651045+ahiguera-mx@users.noreply.github.com> Co-authored-by: Giovanni Volta <38431109+GiovanniVolta@users.noreply.github.com> Co-authored-by: GiovanniVolta <gvolta@dali-login1.rcc.local> Co-authored-by: Daniel Wenz <43881800+WenzDaniel@users.noreply.github.com> Co-authored-by: Tuan Khai Bui <82461188+tuankhaibui@users.noreply.github.com> Co-authored-by: Keita Mizukoshi <mzks@stu.kobe-u.ac.jp> Co-authored-by: Evan Shockley <eshockley@physics.ucsd.edu> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: tianyu zhu <tz2263@columbia.edu> Co-authored-by: Daniel Wenz <dwenz@students.uni-mainz.de> Co-authored-by: Shingo Kazama <kazama@isee.nagoya-u.ac.jp> Co-authored-by: Shengchao Li <li4006@purdue.edu> Co-authored-by: Shengchao Li <scli@dali-login2.rcc.local> Co-authored-by: Kexin Liu <lkx21@mails.tsinghua.edu.cn> Co-authored-by: Kexin Liu <kexinliu@dali-login1.rcc.local> Co-authored-by: Jianyu Long <38538701+Jianyu010@users.noreply.github.com> Co-authored-by: Jingqiang Ye <jyy2139@columbia.edu> Co-authored-by: Daniel Wenz <dwenz@kabelmail.de> Co-authored-by: Luisa Hoetzsch <hoetzsch@mpi-hd.mpg.de> Co-authored-by: Luisa Hoetzsch <hoetzsch@dali-login1.rcc.local> Co-authored-by: Luisa Hoetzsch <luisa.hoetzsch@mpi-hd.mpg.de> Co-authored-by: Diego Ramírez García <diego.ramirez@physik.uni-freiburg.de> Co-authored-by: Johanna Jakob <56300925+jjakob03@users.noreply.github.com> Co-authored-by: Ricardo Peres <rperes@physik.uzh.ch> Co-authored-by: Lutz Althüser <account@l-althueser.de> Co-authored-by: Yossi Mosbacher <joe.mosbacher@gmail.com> Co-authored-by: Dacheng Xu <xdc17@mails.tsinghua.edu.cn> Co-authored-by: Dacheng Xu <xudctron@gmail.com> Co-authored-by: Knut Dundas Morå <kdm2160@columbia.edu> Co-authored-by: Yue Ma <3124558229@qq.com> Co-authored-by: Shenyang Shi <ss6109@columbia.edu>
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Bumps nbsphinx from 0.8.7 to 0.8.8.
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beb8fd6Release 0.8.8efd08d8DOC: mention prerequisites in CONTRIBUTING948ec64DOC: enable the sphinx_codeautolink extension (+ intersphinx)01cc76eInsert autolink-concat directive into notebooks if sphinx_codeautolink is loaded9a9ee2dsupport text builder4030600Replace leading/trailing empty code lines with <br/>44829f1Escape </script> tags in JSON datab34f3e4CSS: update for hiding copy button in prompts8bd2557Change internal representation of _BROKEN_THUMBNAIL4fc5c01CI: add -y flag to apt-get callsDependabot will resolve any conflicts with this PR as long as you don't alter it yourself. You can also trigger a rebase manually by commenting
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