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Do NOT unset CUTAX_LOCATION when specified local cutax #82

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Jan 21, 2024
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Do NOT unset CUTAX_LOCATION when specified local cutax #82

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7 changes: 6 additions & 1 deletion utilix/batchq.py
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Original file line number Diff line number Diff line change
Expand Up @@ -169,7 +169,12 @@ def submit_job(jobstring,
if container:
# need to wrap job into another executable
jobstring = singularity_wrap(jobstring, container, bind, partition)
jobstring = 'unset X509_CERT_DIR CUTAX_LOCATION\n' + 'module load singularity\n' + jobstring

# if you have exported INSTALL_CUTAX to be 1, then you do NOT need to unset it
if os.environ.get('INSTALL_CUTAX') != '1':
jobstring = 'unset X509_CERT_DIR\n' + 'module load singularity\n' + jobstring
else:
jobstring = 'unset X509_CERT_DIR CUTAX_LOCATION\n' + 'module load singularity\n' + jobstring

if not hours is None:
hours = '#SBATCH --time={:02d}:{:02d}:{:02d}'.format(int(hours), int(hours * 60 % 60), int(hours * 60 % 60 * 60 % 60))
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