PyGOrilla

Python wrapper for GOrilla

GOrilla: a tool for discovery and visualization of enriched GO terms in ranked gene lists E Eden, R Navon, I Steinfeld, D Lipson, Z Yakhini - BMC bioinformatics, 2009

Installation:

pip install pyGOrilla

Usage options:

See Examples\SimpleExample.ipynb notebook for usage reference

References

If you choose to use this application please cite:

• Eran Eden*, Roy Navon*, Israel Steinfeld, Doron Lipson and Zohar Yakhini. "GOrilla: A Tool For Discovery And Visualization of Enriched GO Terms in Ranked Gene Lists", BMC Bioinformatics 2009, 10:48.

• Eran Eden, Doron Lipson, Sivan Yogev, Zohar Yakhini. "Discovering Motifs in Ranked Lists of DNA sequences", PLoS Computational Biology, 3(3):e39, 2007.

Notes

Please note: To prevent the GOrilla server from overloading we have an informal policy to limit calls to to 1,000 daily (per user).

Enjoy!