tRFtarget (http://trftarget.net/) is a comprehensive platform consolidating both computationally predicted and experimentally validated binding interactions between transfer RNA-derived fragments (tRFs) and target transcripts across multiple organisms.
Users can:
- Search or browse predicted tRF targets.
- Run our pipeline tRFtarget-pipeline to get targets of tRFs or other small non-coding RNAs (such as miRNAs) locally or via our web service in http://trftarget.net/online_targets.
- Browse experimental evidences of the predicted tRF-RNA interactions based on manually curated publications.
If you use tRFtarget or tRFtarget pipeline, please cite:
Ningshan Li, Nayang Shan, Lingeng Lu, Zuoheng Wang. tRFtarget: a database for transfer RNA-derived fragment targets. Nucleic Acids Research, Volume 49, Issue D1, 8 January 2021, Pages D254–D260. https://doi.org/10.1093/nar/gkaa831.
Users are welcome to send feedbacks, suggestions or comments on the tRFtarget database, and report tRF target experiments that are not included in the database through Issues.
For issues in using tRFtarget pipeline, please report to GitHub repository tRFtarget-pipeline.