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When loading in data automatically (e.g. using graphein.ml.ProteinGraphDataset), if a particular uniprot ID is given that doesn't have an AlphaFold entry (e.g. "A9UF07", "P78527"), an exception is thrown by wget. This should be captured and used to return None or similar as the filepath; and the DataSet should exclude this from the data that will be then loaded as the downstream graphs will not be able to be created.
The text was updated successfully, but these errors were encountered:
* Catch AF2 download error #225
* update changelog
* Update function signature
* [pre-commit.ci] auto fixes from pre-commit.com hooks
for more information, see https://pre-commit.ci
* Revert "[pre-commit.ci] auto fixes from pre-commit.com hooks"
This reverts commit 5f27e51.
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* [pre-commit.ci] auto fixes from pre-commit.com hooks
for more information, see https://pre-commit.ci
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
When loading in data automatically (e.g. using
graphein.ml.ProteinGraphDataset
), if a particular uniprot ID is given that doesn't have an AlphaFold entry (e.g."A9UF07", "P78527"
), an exception is thrown bywget
. This should be captured and used to returnNone
or similar as the filepath; and theDataSet
should exclude this from the data that will be then loaded as the downstream graphs will not be able to be created.The text was updated successfully, but these errors were encountered: