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V1.5.1 #201

Merged
merged 12 commits into from
Aug 1, 2022
Merged

V1.5.1 #201

merged 12 commits into from
Aug 1, 2022

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a-r-j
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@a-r-j a-r-j commented Jul 27, 2022

Reference Issues/PRs

#198 #199 #200

What does this implement/fix? Explain your changes

  • Adds missing MSE residue to constants
  • Fixes chain id check in atomic edge construction
  • Fixes incorrect deprotonation proceduce in protein graph construction

Pull Request Checklist

  • Added a note about the modification or contribution to the ./CHANGELOG.md file (if applicable)
  • Added appropriate unit test functions in the ./graphein/tests/* directories (if applicable)
  • Modify documentation in the corresponding Jupyter Notebook under ./notebooks/ (if applicable)
  • Ran python -m py.test tests/ and make sure that all unit tests pass (for small modifications, it might be sufficient to only run the specific test file, e.g., python -m py.test tests/protein/test_graphs.py)
  • Checked for style issues by running black . and isort .

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codecov-commenter commented Aug 1, 2022

Codecov Report

Merging #201 (4d3684f) into master (8123f42) will increase coverage by 7.62%.
The diff coverage is 51.35%.

@@            Coverage Diff             @@
##           master     #201      +/-   ##
==========================================
+ Coverage   40.27%   47.89%   +7.62%     
==========================================
  Files          48       92      +44     
  Lines        2811     5502    +2691     
==========================================
+ Hits         1132     2635    +1503     
- Misses       1679     2867    +1188     
Impacted Files Coverage Δ
graphein/grn/parse_trrust.py 37.77% <ø> (ø)
graphein/ml/diffusion.py 0.00% <0.00%> (ø)
graphein/ppi/edges.py 100.00% <ø> (ø)
graphein/ppi/graph_metadata.py 0.00% <ø> (ø)
graphein/ppi/graphs.py 54.34% <ø> (ø)
graphein/ppi/parse_biogrid.py 75.00% <ø> (ø)
graphein/ppi/visualisation.py 0.00% <0.00%> (ø)
graphein/protein/analysis.py 0.00% <0.00%> (ø)
graphein/protein/edges/intramolecular.py 22.68% <0.00%> (ø)
graphein/protein/features/sequence/utils.py 28.00% <0.00%> (+3.00%) ⬆️
... and 79 more

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@sonarcloud
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sonarcloud bot commented Aug 1, 2022

Kudos, SonarCloud Quality Gate passed!    Quality Gate passed

Bug A 0 Bugs
Vulnerability A 0 Vulnerabilities
Security Hotspot A 0 Security Hotspots
Code Smell A 0 Code Smells

No Coverage information No Coverage information
0.0% 0.0% Duplication

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@a-r-j a-r-j left a comment

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LGTM :)

@a-r-j a-r-j merged commit c07fc78 into master Aug 1, 2022
@a-r-j a-r-j deleted the v1.5.1 branch November 10, 2022 12:45
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2 participants