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Add tensor parsing util #244

Merged
merged 127 commits into from
Jan 30, 2023
Merged

Add tensor parsing util #244

merged 127 commits into from
Jan 30, 2023

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a-r-j
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@a-r-j a-r-j commented Dec 9, 2022

Reference Issues/PRs

Pull Request Checklist

  • Added a note about the modification or contribution to the ./CHANGELOG.md file (if applicable)
  • Added appropriate unit test functions in the ./graphein/tests/* directories (if applicable)
  • Modify documentation in the corresponding Jupyter Notebook under ./notebooks/ (if applicable)
  • Ran python -m py.test tests/ and make sure that all unit tests pass (for small modifications, it might be sufficient to only run the specific test file, e.g., python -m py.test tests/protein/test_graphs.py)
  • Checked for style issues by running black . and isort .

a-r-j and others added 30 commits December 9, 2022 13:49
* Add gdt metric

* [pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci

* Add TMScore

* [pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci

* Add init

* [pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci

* Update readme

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
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codecov-commenter commented Jan 20, 2023

Codecov Report

Base: 40.27% // Head: 45.27% // Increases project coverage by +5.00% 🎉

Coverage data is based on head (e861145) compared to base (8123f42).
Patch coverage: 48.87% of modified lines in pull request are covered.

❗ Current head e861145 differs from pull request most recent head ed463a4. Consider uploading reports for the commit ed463a4 to get more accurate results

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Additional details and impacted files
@@            Coverage Diff             @@
##           master     #244      +/-   ##
==========================================
+ Coverage   40.27%   45.27%   +5.00%     
==========================================
  Files          48      111      +63     
  Lines        2811     7073    +4262     
==========================================
+ Hits         1132     3202    +2070     
- Misses       1679     3871    +2192     
Impacted Files Coverage Δ
graphein/ml/diffusion.py 0.00% <0.00%> (ø)
graphein/ml/metrics/__init__.py 0.00% <0.00%> (ø)
graphein/ml/metrics/gdt.py 0.00% <0.00%> (ø)
graphein/ml/metrics/tm_score.py 0.00% <0.00%> (ø)
graphein/ppi/graph_metadata.py 0.00% <0.00%> (ø)
graphein/ppi/visualisation.py 0.00% <0.00%> (ø)
graphein/protein/analysis.py 0.00% <0.00%> (ø)
graphein/protein/features/sequence/utils.py 28.00% <0.00%> (+3.00%) ⬆️
graphein/protein/features/utils.py 27.77% <0.00%> (ø)
graphein/protein/folding_utils.py 0.00% <0.00%> (ø)
... and 107 more

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☔ View full report at Codecov.
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@a-r-j a-r-j mentioned this pull request Jan 28, 2023
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sonarcloud bot commented Jan 30, 2023

SonarCloud Quality Gate failed.    Quality Gate failed

Bug A 0 Bugs
Vulnerability A 0 Vulnerabilities
Security Hotspot E 1 Security Hotspot
Code Smell A 49 Code Smells

No Coverage information No Coverage information
0.2% 0.2% Duplication

@a-r-j a-r-j merged commit 4f9563b into master Jan 30, 2023
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2 participants