GeneAnalysisProgramming

Compilation of Gene Analysis Algorithms for hopefully some useful Machine Learning application later.

Gene Ally

This is a GUI based application that will perform the algorithms implemented in the software.

Needleman-Wunsch Algorithm

This algorithm is used primarily for gene sequencing looking for the optimal match between multiple gene sequences. For a physical and interactive understanding of the software used you can go to http://experiments.mostafa.io/public/needleman-wunsch/. It is a very interesting algorithm and I would suggest you check it out.

https://en.wikipedia.org/wiki/Needleman%E2%80%93Wunsch_algorithm

Cytogenic Location

This program will implement the Cytogenic Location organization technique which is a technique for finding where specific genes will be located by giving the chromosome, arm, region and band. 7q31.2, for example, would be the CFTR gene located on the 7th chromosome's long arm, in the 3rd region on the 1st band, and the 2nd sub-band.

CTFR (cystic fibrosis transmembrane conductance regulator)

FIRST GENE USABLE IN PROGRAM. Located at 7q31.2. https://ghr.nlm.nih.gov/gene/CFTR

AAAS(aladin WD repeat nucleoporin)

Located at 12q13.13. https://ghr.nlm.nih.gov/gene/AAAS

ABAT(4-aminobutyrate aminotransferase)

Located at 16p13.2. https://ghr.nlm.nih.gov/gene/ABAT

ABCA1 (ATP binding cassette subfamily A member 1)

Located at 9q31.1. https://ghr.nlm.nih.gov/gene/ABCA1

ABCA12 (ATP binding cassette subfamily A member 12)

Located at 2q35. https://ghr.nlm.nih.gov/gene/ABCA12

ABCA3 (ATP binding cassette subfamily A member 3)

Located at 16p13.3. https://ghr.nlm.nih.gov/gene/ABCA3