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1. nf-core/rnaseq nf-core/rnaseq Public

   RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

   Nextflow 912 708

2. nf-core/sarek nf-core/sarek Public

   Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing

   Nextflow 408 415

3. nf-core/tools nf-core/tools Public

   Python package with helper tools for the nf-core community.

   Python 242 191

4. nf-core/modules nf-core/modules Public

   Repository to host tool-specific module files for the Nextflow DSL2 community!

   Nextflow 283 719

5. nf-core/test-datasets nf-core/test-datasets Public

   Test data to be used for automated testing with the nf-core pipelines

   105 353