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For future reference (primarily for me), if manual clean up is required, the powershell command Get-Process java | select id,path will list all the process IDs and their paths - any process running on the System Java is the Jenkins Agent, any others can be killed (via PS, or Resource Monitor). This only works with Admin privileges though (hence why we don't do that in tests).
https://ci.adoptopenjdk.net/view/Failing%20Test%20Jobs/job/Test_openjdk8_hs_extended.openjdk_x86-64_windows/18/consoleFull
https://ci.adoptopenjdk.net/computer/test-ibmcloud-win2012r2-x64-1/
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