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how to apply SCENIC to another species(zebrafish) except for human,mouse and fly? #69

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rlawltn9718 opened this issue Jan 4, 2023 · 1 comment
Open

how to apply SCENIC to another species(zebrafish) except for human,mouse and fly? #69

rlawltn9718 opened this issue Jan 4, 2023 · 1 comment

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@rlawltn9718
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I've generated cistarget database for zebrafish. but I'm stopped at the initializeScenic step.
May I ask how to bypass the requirement in initializeScenic() that 'org' should be one of: mgi, hgnc, dmel?
@jiangpuxuan
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jiangpuxuan commented Aug 8, 2024 •
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motifAnnotations_mgi<-motifAnnotations_yourcustom
scenicOptions@settings$db_annotFiles<-'./motifAnnotations_yourcustomdatafile.txt'

use getDbAnnotations(scenicOptions) to chek it

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@jiangpuxuan @rlawltn9718