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Issues list

How should one interpret or do with those cells assigned to a different cluster by SCENIC?
#85 opened Oct 20, 2024 by robertzeibich
Inquiry on Comparative Analysis of Regulon Activity Using pySCENIC in different groups.
#83 opened Jun 22, 2024 by chenfengQAQ
4
nextflow Segmentation fault preprocess_visualize_project_scanpy.py cluster
#82 opened Apr 7, 2024 by vagabond12
Will regulon outputs be biased by a large proportion of homogeneous cells in my dataset?
#81 opened Dec 19, 2023 by katsturgess
Kernal dead
#80 opened Nov 15, 2023 by Chrisdoan9
TypeError: void() takes exactly 1 positional argument (0 given)
#79 opened Aug 27, 2023 by clg12
1
Cannot load pbmc10k_scenic_integrated-output.loom following the Jupyter notebook tutorial
#78 opened Aug 25, 2023 by kangjiajinlong
KeyError: 'RegulonsAUC' when running PBMC10k_SCENIC-protocol-CLI
#77 opened Aug 11, 2023 by geenaildefonso
After running the three Docker steps what next??
#76 opened Aug 1, 2023 by faizjab
1
How long for pyscenic ctx to run?
#75 opened Jul 19, 2023 by igrisch
2
download all files in https://resources.aertslab.org/cistarget/
#74 opened Jul 18, 2023 by GeneVector5
can I use nextflow output reg.csv and adj.csv file?
#73 opened Jul 10, 2023 by daweibushen
The rss results are different between R and python
#72 opened Jun 2, 2023 by ZivTQ
1
AUCell - AttributeError: 'Series' object has no attribute 'iteritems'
#71 opened May 3, 2023 by shrutikhare-git
1
Installation says python3.6 but pandas1.3.5 requires python3.7+
#70 opened Mar 1, 2023 by Jiayi-Zheng
how to apply SCENIC to another species(zebrafish) except for human,mouse and fly?
#69 opened Jan 4, 2023 by rlawltn9718
1
Problem to install VSN_Pipelines
#67 opened Oct 25, 2022 by StevenTur
Metadata for aucell output
#64 opened Sep 6, 2022 by LinearParadox
Memory error while running on CLI
#62 opened Aug 21, 2022 by Erfan1369
Help with Analysis for Multiple samples, Counts normalization?
#58 opened Jul 25, 2022 by AlinaKurjan
1
Memory required for running pyscenic
#57 opened Jul 19, 2022 by sidrahmaryam-cyber
2
nextflow pipeline error: Signatures dataframe is empty
#54 opened May 16, 2022 by Zifeng-L
Question about the input of pyscenic ctx
#53 opened Apr 24, 2022 by xuzhougeng
1
Not able to change the pyscenic version to 0.10.4 in the nextflow pipeline --pyscenic_container
#51 opened Mar 15, 2022 by ammarsabir15
How to switch the revision of nextflow and jumpover the preprocess steps in nf?
#48 opened Oct 11, 2021 by Zifeng-L
ProTip! What’s not been updated in a month: updated:<2024-10-10.