NOAA Puget Sound Nearshore Fish data curation code

Overview

The code in this folder prepares data for the NOAA Puget Sound Nearshore Fish dataset on lila.science, and trains a preliminary detector.

Gratuitous image with ground truth and predicted bounding boxes, from the results on the validation locations:

Files

prepare-noaa-fish-data-for-lila.py

Given the Excel file provided by NOAA, prepare data in COCO format for release on LILA.

prepare-noaa-fish-data-for-training.py

• Convert annotations from COCO format to YOLO format
• Split locations into train/val
• Train YOLOv5 (command-line instructions, not done programmatically)
• Validate and preview training results on train/val data