Merge branch 'cda-core-2-0' into lab_r5

.gitignore

@@ -6,5 +6,9 @@ resources/ig-expansion-parameters.json
 resources/ig-new.json
 resources/ig-new.xml
 resources/ig-validation-parameters.json
-org.hl7.fhir.validation.cli.jar
-package.tgz
+org.hl7.fhir.publisher.jar
+input-cache/schemas/
+.DS_Store
+input-cache/workgroups.xml
+input-cache/txcache/
+input-cache/publisher.jar

README.md

@@ -0,0 +1,27 @@
+# cda-core-2.0
+
+CDA Schema and FHIR Logical model for CDA (supports the CCDA on FHIR guide, and other CDA/FHIR mapping projects)
+
+## CDA Schema
+
+The `schema/normative` folder contains the original published CDA Schema. This is the schema which is published with the base/core standard. This is mainly used for historical reference. See "CDA Schema Extensions" below for the latest version that includes all extensions; which most people will want to use.
+
+### CDA Stylesheet
+
+The CDA Stylesheet is located [here](https://github.com/HL7/cda-core-xsl). It is currently being managed by Alex Henket for SDWG.
+
+## CDA Schema Extensions
+
+The `schema/extensions` folder contains an `SDTC` folder which has the updated CDA schema with all SDTC extensions that are approved by HL7.
+
+## FHIR Logical Models for CDA
+
+The `input` directory contains FHIR artifacts representing the core CDA logic models (in StructureDefinition resources).
+The FHIR logical models for CDA are currently in development and do not yet include all approved CDA/SDTC extensions. It is the goal to eventually have all approved extensions represented in the FHIR logical models for CDA, at which point the two sets of artifacts will be aligned. Until this time, releases within this repository will include FHIR logical models for CDA that do not perfectly represent the CDA schema in the release.
+
+Files/folders related to the FHIR logical models:
+* input/
+* input-cache/
+* _updatePublisher.bat
+* ig.ini
+* publish.bat

_genonce.sh

@@ -0,0 +1,28 @@
+#!/bin/bash
+publisher_jar=publisher.jar
+input_cache_path=./input-cache/
+echo Checking internet connection...
+curl -sSf tx.fhir.org > /dev/null
+
+if [ $? -eq 0 ]; then
+	echo "Online"
+	txoption=""
+else
+	echo "Offline"
+	txoption="-tx n/a"
+fi
+
+echo "$txoption"
+
+publisher=$input_cache_path/$publisher_jar
+if test -f "$publisher"; then
+	java -jar $publisher -ig . $txoption $*
+
+else
+	publisher=../$publisher_jar
+	if test -f "$publisher"; then
+		java -jar $publisher -ig . $txoption $*
+	else
+		echo IG Publisher NOT FOUND in input-cache or parent folder.  Please run _updatePublisher.  Aborting...
+	fi
+fi

_updatePublisher.bat

@@ -0,0 +1,6 @@
+
+@MKDIR input-cache
+@ECHO "Downloading most recent publisher - it's ~100 MB, so this may take a bit
+@POWERSHELL -command (new-object System.Net.WebClient).DownloadFile(\"https://github.com/HL7/fhir-ig-publisher/releases/latest/download/publisher.jar\",\"org.hl7.fhir.publisher.jar\")
+@ECHO "Done"
+@PAUSE

_updatePublisher.sh

@@ -0,0 +1,129 @@
+#!/bin/bash
+pubsource=https://github.com/HL7/fhir-ig-publisher/releases/latest/download/
+publisher_jar=publisher.jar
+dlurl=$pubsource$publisher_jar
+
+input_cache_path=$PWD/input-cache/
+
+scriptdlroot=https://raw.githubusercontent.com/HL7/ig-publisher-scripts/main
+update_bat_url=$scriptdlroot/_updatePublisher.bat
+gen_bat_url=$scriptdlroot/_genonce.bat
+gencont_bat_url=$scriptdlroot/_gencontinuous.bat
+gencont_sh_url=$scriptdlroot/_gencontinuous.sh
+gen_sh_url=$scriptdlroot/_genonce.sh
+update_sh_url=$scriptdlroot/_updatePublisher.sh
+
+skipPrompts=false
+FORCE=false
+
+if ! type "curl" > /dev/null; then
+	echo "ERROR: Script needs curl to download latest IG Publisher. Please install curl."
+	exit 1
+fi
+
+while [ "$#" -gt 0 ]; do
+    case $1 in
+    -f|--force)  FORCE=true ;;
+    -y|--yes)  skipPrompts=true ; FORCE=true ;;
+    *)  echo "Unknown parameter passed: $1.  Exiting"; exit 1 ;;
+    esac
+    shift
+done
+
+echo "Checking internet connection"
+curl -sSf tx.fhir.org > /dev/null
+
+if [ $? -ne 0 ] ; then
+  echo "Offline (or the terminology server is down), unable to update.  Exiting"
+  exit 1
+fi
+
+if [ ! -d "$input_cache_path" ] ; then
+  if [ $FORCE != true ]; then
+    echo "$input_cache_path does not exist"
+    message="create it?"
+    read -r -p "$message" response
+    else
+    response=y
+  fi
+fi
+
+if [[ $response =~ ^[yY].*$ ]] ; then
+  mkdir ./input-cache
+fi
+
+publisher="$input_cache_path$publisher_jar"
+
+if test -f "$publisher" ; then
+	echo "IG Publisher FOUND in input-cache"
+	jarlocation="$publisher"
+	jarlocationname="Input Cache"
+	upgrade=true
+else
+	publisher="../$publisher_jar"
+	upgrade=true
+	if test -f "$publisher"; then
+		echo "IG Publisher FOUND in parent folder"
+		jarlocation="$publisher"
+		jarlocationname="Parent Folder"
+		upgrade=true
+	else
+		echo "IG Publisher NOT FOUND in input-cache or parent folder"
+		jarlocation=$input_cache_path$publisher_jar
+		jarlocationname="Input Cache"
+		upgrade=false
+	fi
+fi
+
+if [[ $skipPrompts == false ]]; then
+
+  if [[ $upgrade == true ]]; then
+    message="Overwrite $jarlocation? (Y/N) "
+  else
+    echo Will place publisher jar here: "$jarlocation"
+    message="Ok (enter 'y' or 'Y' to continue, any other key to cancel)?"
+  fi
+  read -r -p "$message" response
+else
+  response=y
+fi
+if [[ $skipPrompts == true ]] || [[ $response =~ ^[yY].*$ ]]; then
+
+	echo "Downloading most recent publisher to $jarlocationname - it's ~100 MB, so this may take a bit"
+	curl -L $dlurl -o "$jarlocation" --create-dirs
+else
+	echo cancelled publisher update
+fi
+
+if [[ $skipPrompts != true ]]; then
+    message="Update scripts? (enter 'y' or 'Y' to continue, any other key to cancel)?"
+    read -r -p "$message" response
+  fi
+
+if [[ $skipPrompts == true ]] || [[ $response =~ ^[yY].*$ ]]; then
+  echo "Downloading most recent scripts "
+
+  curl -L $update_bat_url -o /tmp/_updatePublisher.new
+  cp /tmp/_updatePublisher.new _updatePublisher.bat
+  rm /tmp/_updatePublisher.new
+
+  curl -L $gen_bat_url -o /tmp/_genonce.new
+  cp /tmp/_genonce.new _genonce.bat
+  rm /tmp/_genonce.new
+
+  curl -L $gencont_bat_url -o /tmp/_gencontinuous.new
+  cp /tmp/_gencontinuous.new _gencontinuous.bat
+  rm /tmp/_gencontinuous.new
+
+  curl -L $gencont_sh_url -o /tmp/_gencontinuous.new
+  cp /tmp/_gencontinuous.new _gencontinuous.sh
+  rm /tmp/_gencontinuous.new
+
+  curl -L $gen_sh_url -o /tmp/_genonce.new
+  cp /tmp/_genonce.new _genonce.sh
+  rm  /tmp/_genonce.new
+
+  curl -L $update_sh_url -o /tmp/_updatePublisher.new
+  cp /tmp/_updatePublisher.new _updatePublisher.sh
+  rm /tmp/_updatePublisher.new
+fi

ig.ini

@@ -1,3 +1,13 @@
 [IG]
 ig = input\hl7.fhir.cda.xml
-template = ch.fhir.ig.template#current
+template = hl7.cda.template#current
+usage-stats-opt-out = false
+copyrightyear = 2019+
+license = CC0-1.0
+version = 2.1.0
+ballotstatus = CI Build
+fhirspec = http://build.fhir.org/
+#excludexml = Yes
+#excludejson = Yes
+#excludettl = Yes
+#excludeMaps = Yes