- update config scripts for sciclone that define environment variables (e.g., PYTHONPATH) and load necessary modules (see src/sciclone dir). reload files (
source <file>
or logout to load changes - install python package if needed (unlikely these will ever get wiped, but list is in sciclone/pip_list.txt) see sciclone/scipip for pip install
- make sure HPC account being used is set as priority user on for vortex-alpha nodes (HPC staff can do this)
- make sure HPC servers have necessary ports open for mongodb, gmail
- have IT open mongodb ports for geo.aiddata.wm.edu and all HPC servers (prod and dev servers, where applicable)
- update mongod.conf
- copy db_backup_script.sh and add cron (see comments in script for details)
- run
bash setup.sh <branch>
- see ingest dir for specifics on ingesting datasets (related resources in asdf-datasets repo)