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Aiden Lab

The Center for Genome Architecture

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  1. juicer juicer Public

    A One-Click System for Analyzing Loop-Resolution Hi-C Experiments

    Shell 421 183

  2. Juicebox Juicebox Public

    Visualization and analysis software for Hi-C data -

    Java 247 58

  3. 3d-dna 3d-dna Public

    3D de novo assembly (3D DNA) pipeline

    Shell 207 55

  4. straw straw Public

    Extract data quickly from Juicebox via straw

    C++ 64 35

  5. BEAR BEAR Public

    BEAR: viral diagnostic analysis pipeline for SARS-CoV-2

    Shell 7 1

  6. EigenVector EigenVector Public

    Forked from moshe-olshansky/EigenVector

    R functions for very fast eigenvector calculation

    C 7 4

Repositories

Showing 10 of 29 repositories
  • juicer Public

    A One-Click System for Analyzing Loop-Resolution Hi-C Experiments

    aidenlab/juicer’s past year of commit activity
    Shell 421 MIT 183 85 5 Updated Nov 22, 2024
  • Juicebox Public

    Visualization and analysis software for Hi-C data -

    aidenlab/Juicebox’s past year of commit activity
    Java 247 MIT 58 248 (2 issues need help) 3 Updated Aug 6, 2024
  • sw2stl Public
    aidenlab/sw2stl’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Aug 2, 2024
  • 3d-carta Public
    aidenlab/3d-carta’s past year of commit activity
    Shell 0 MIT 0 1 0 Updated May 22, 2024
  • clear-tools Public Forked from sa501428/clear-tools

    Chromatin Landscape Exploration, Analysis, and Research Tools

    aidenlab/clear-tools’s past year of commit activity
    Java 0 MIT 2 0 0 Updated Apr 26, 2024
  • straw Public

    Extract data quickly from Juicebox via straw

    aidenlab/straw’s past year of commit activity
    C++ 64 MIT 35 32 0 Updated Mar 31, 2024
  • 3d-dna Public

    3D de novo assembly (3D DNA) pipeline

    aidenlab/3d-dna’s past year of commit activity
    Shell 207 MIT 55 64 1 Updated Nov 29, 2023
  • BEAR Public

    BEAR: viral diagnostic analysis pipeline for SARS-CoV-2

    aidenlab/BEAR’s past year of commit activity
    Shell 7 MIT 1 1 0 Updated Feb 23, 2023
  • PAP Public Forked from peradastra/PAP
    aidenlab/PAP’s past year of commit activity
    Shell 0 1 0 0 Updated Jan 23, 2023
  • EigenVector Public Forked from moshe-olshansky/EigenVector

    R functions for very fast eigenvector calculation

    aidenlab/EigenVector’s past year of commit activity
    C 7 9 0 1 Updated Jan 18, 2023
View all repositories

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