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Implement next and iter for the Node.open deprecation wrapper #4399

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sphuber
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@sphuber sphuber commented Sep 25, 2020

Fixes #4396

The return value of Node.open was wrapped in WarnWhenNotEntered in
aiida-core==1.4.0 in order to warn users that use the method without a
context manager, which will start to raise in v2.0. Unfortunately, the
raising came a little early as the wrapper does not implement the
__iter__ and __next__ methods, which can be called by clients.

An example is numpy.genfromtxt which will notice the return value of
Node.open is filelike and so will wrap it in iter. Without the
current fix, this raises a TypeError. The proper fix would be to
forward all magic methods to the wrapped filelike object, but it is not
clear how to do this.

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codecov bot commented Sep 25, 2020

Codecov Report

Merging #4399 into develop will increase coverage by 0.01%.
The diff coverage is 100.00%.

Impacted file tree graph

@@             Coverage Diff             @@
##           develop    #4399      +/-   ##
===========================================
+ Coverage    79.22%   79.22%   +0.01%     
===========================================
  Files          475      475              
  Lines        34822    34826       +4     
===========================================
+ Hits         27583    27588       +5     
+ Misses        7239     7238       -1     
Flag Coverage Δ
#django 73.07% <100.00%> (+0.01%) ⬆️
#sqlalchemy 72.29% <100.00%> (+0.01%) ⬆️

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Impacted Files Coverage Δ
aiida/orm/nodes/node.py 81.82% <100.00%> (+0.18%) ⬆️
aiida/engine/daemon/runner.py 82.76% <0.00%> (+3.45%) ⬆️

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greschd
greschd previously approved these changes Sep 25, 2020
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Do we want a regression test for this?

The return value of `Node.open` was wrapped in `WarnWhenNotEntered` in
`aiida-core==1.4.0` in order to warn users that use the method without a
context manager, which will start to raise in v2.0. Unfortunately, the
raising came a little early as the wrapper does not implement the
`__iter__` and `__next__` methods, which can be called by clients.

An example is `numpy.getfromtxt` which will notice the return value of
`Node.open` is filelike and so will wrap it in `iter`. Without the
current fix, this raises a `TypeError`. The proper fix would be to
forward all magic methods to the wrapped filelike object, but it is not
clear how to do this.
@sphuber sphuber force-pushed the fix/4396/node-open-deprecation-wrapper branch from 378a3f9 to 1b97877 Compare September 25, 2020 12:43
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sphuber commented Sep 25, 2020

Do we want a regression test for this?

Done

@sphuber sphuber requested a review from greschd September 25, 2020 12:47
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sphuber commented Sep 25, 2020

@greschd I added a test, this is ready for second review

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Thanks @sphuber !

@sphuber sphuber merged commit 5e1c6fd into aiidateam:develop Sep 25, 2020
@sphuber sphuber deleted the fix/4396/node-open-deprecation-wrapper branch September 25, 2020 13:57
sphuber added a commit to sphuber/aiida-core that referenced this pull request Sep 25, 2020
…iidateam#4399)

The return value of `Node.open` was wrapped in `WarnWhenNotEntered` in
`aiida-core==1.4.0` in order to warn users that use the method without a
context manager, which will start to raise in v2.0. Unfortunately, the
raising came a little early as the wrapper does not implement the
`__iter__` and `__next__` methods, which can be called by clients.

An example is `numpy.getfromtxt` which will notice the return value of
`Node.open` is filelike and so will wrap it in `iter`. Without the
current fix, this raises a `TypeError`. The proper fix would be to
forward all magic methods to the wrapped filelike object, but it is not
clear how to do this.
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New deprecation wrapper for Node.open causes problems with numpy
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