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Devops: Fix the CD workflow #322

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Devops: Fix the CD workflow

Devops: Fix the CD workflow #322

Workflow file for this run

.github/workflows/ci.yml at 8f7610f
name: ci
on: [push, pull_request]
jobs:
pre-commit:
runs-on: ubuntu-latest
timeout-minutes: 5
steps:
- uses: actions/checkout@v3
- name: Set up Python 3.9
uses: actions/setup-python@v4
with:
python-version: 3.9
- name: Install python dependencies
run: |
pip install .[pre_commit,testing]
pip freeze
- name: Run pre-commit
run:
pre-commit run --all-files || ( git status --short ; git diff ; exit 1 )
ubuntu-apt:
# ubuntu using postgresql installed via apt (+ pgtest)
timeout-minutes: 5
strategy:
fail-fast: false
matrix:
python-version: [3.8, 3.11]
os: [ubuntu-20.04, ubuntu-22.04]
runs-on: ${{ matrix.os }}
steps:
- uses: actions/checkout@v3
- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v4
with:
python-version: ${{ matrix.python-version }}
- name: Install system dependencies
run: sudo apt update && sudo apt install postgresql && sudo service postgresql restart
- name: Install pgsu
run: |
pip install -e .[testing]
pip freeze
- name: Run test suite
run: pytest --cov-report xml -sv
- name: Upload coverage report
if: github.repository == 'aiidateam/pgsu'
uses: codecov/codecov-action@v4
with:
token: ${{ secrets.CODECOV_TOKEN }}
name: ubuntu-apt
file: ./coverage.xml
fail_ci_if_error: true
ubuntu-postgres-action:
# ubuntu using postgres docker container (custom action)
runs-on: ubuntu-22.04
timeout-minutes: 5
strategy:
matrix:
python-version: [3.9]
postgres-pw: ["testpw"]
steps:
- uses: actions/checkout@v3
- uses: CasperWA/postgresql-action@v1.2
with:
postgresql version: '10'
postgresql db: test_db
postgresql user: postgres
postgresql password: ${{ matrix.postgres-pw}}
#postgresql auth: trust
- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v4
with:
python-version: ${{ matrix.python-version }}
- name: Install pgsu
run: |
pip install -e .[testing]
pip freeze
- name: Run test suite
env:
PGSU_TEST_PASSWORD: ${{ matrix.postgres-pw}}
run: pytest --cov-report xml -sv
- name: Upload coverage report
if: github.repository == 'aiidateam/pgsu'
uses: codecov/codecov-action@v4
with:
token: ${{ secrets.CODECOV_TOKEN }}
name: ubuntu-apt
file: ./coverage.xml
fail_ci_if_error: true
ubuntu-postgres-service:
# ubuntu using postgres docker container (service provided by github actions)
runs-on: ubuntu-22.04
timeout-minutes: 5
strategy:
matrix:
python-version: [3.9]
postgres-pw: ["testpw"]
services:
postgres:
image: postgres:10.8
env:
POSTRGRES_USER: postgres
POSTGRES_PASSWORD: ${{ matrix.postgres-pw}}
POSTGRES_DB: test_db
ports:
# will assign a random free host port
- 5432/tcp
options: --health-cmd pg_isready --health-interval 10s --health-timeout 5s --health-retries 5
steps:
- uses: actions/checkout@v3
- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v4
with:
python-version: ${{ matrix.python-version }}
- name: Install pgsu
run: |
pip install -e .[testing]
pip freeze
- name: Run test suite
env:
PGSU_TEST_PASSWORD: ${{ matrix.postgres-pw}}
PGSU_TEST_PORT: ${{ job.services.postgres.ports[5432] }}
run: pytest --cov-report xml -sv
- name: Upload coverage report
if: github.repository == 'aiidateam/pgsu'
uses: codecov/codecov-action@v4
with:
token: ${{ secrets.CODECOV_TOKEN }}
name: ubuntu-postgres-service
file: ./coverage.xml
fail_ci_if_error: true
# macos-brew:
# # macos using postgres installed via homebrew (+pgtest)
#
# runs-on: macos-12
# timeout-minutes: 5
#
# strategy:
# matrix:
# python-version: [3.8]
#
# steps:
# - uses: actions/checkout@v3
#
# - name: Set up Python ${{ matrix.python-version }}
# uses: actions/setup-python@v4
# with:
# python-version: ${{ matrix.python-version }}
#
# - name: Install system dependencies
# run: |
# brew install postgresql || brew link --overwrite postgresql
#
# - name: Install pgsu
# run: |
# pip install -e .[testing]
# pip freeze
#
# # note: I tested this locally with *only* the homebrew postgres server running and it worked.
# # no idea why this does not work on github actions
# # Edit: It seems homebrew postgresql does not create the postgres user automatically.
# - name: Run test suite
# run: |
# brew services start postgresql
# brew services list
# pytest
multi-conda:
# windows and macos with postgres installed via conda (+pgtest)
runs-on: ${{ matrix.os }}
timeout-minutes: 5
strategy:
matrix:
python-version: [3.8]
os: ['macos-12', 'windows-2022']
steps:
- uses: actions/checkout@v3
- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v4
with:
python-version: ${{ matrix.python-version }}
- uses: conda-incubator/setup-miniconda@v3
with:
python-version: ${{ matrix.python-version }}
run-post: false # https://github.com/conda-incubator/setup-miniconda/issues/280
- name: Install system dependencies
shell: bash -l {0}
run: |
conda install -y -c anaconda postgresql
initdb -D test_db
pg_ctl -D test_db -o "-d 5" start # start with debugging
- name: Install pgsu
run: |
pip install -e .[testing]
pip freeze
- name: Run test suite
run: pytest --cov-report xml -sv
- name: Upload coverage report
if: github.repository == 'aiidateam/pgsu'
uses: codecov/codecov-action@v4
with:
token: ${{ secrets.CODECOV_TOKEN }}
name: "${{ matrix.os }}-conda"
file: ./coverage.xml
fail_ci_if_error: true