Skip to content

Converts CSV formatted assay data into a CSV format suitable for Prism 6 import

Notifications You must be signed in to change notification settings

ameske/csvtoprism

Folders and files

NameName
Last commit message
Last commit date

Latest commit

 

History

19 Commits
 
 
 
 
 
 
 
 
 
 
 
 

Repository files navigation

csvtoprism takes a CSV representation of the results from an assay and converts them to a format for Prism 6.

# Input Format

csvtoprism does not expect a rigid input format file. Rather it looks for 8 data lines and 8 identifier lines.

A data line has the following structure, where "A" - "H" represents the literal string "A" - "H" and Data Point is an integer.

```
<["A"-"H"]>,<Data Point>,<Data Point>,<Data Point>,<Data Point>,<Data Point>,<Data Point>,<Data Point>,<Data Point>,<Data Point>,<Data Point>,<Data Point>,<Data Point>
```

An identifier line has the following structure. There may be empty "cells" in the line. csvtoprism will discard those and grab the first 4 non-empty strings.

```
<["A"-"H"]>,<Identifier>,<Identifier>,<Identifier>,<Identifier>
```

# Output Format

Prism 6 takes in data in column format, where the identifiers are on the top row and the data associated with the identifiers are in columns.

About

Converts CSV formatted assay data into a CSV format suitable for Prism 6 import

Resources

Stars

Watchers

Forks

Releases

No releases published

Packages

No packages published