feat(test): adcp single ping test

A simple test to evaluate reading/processing
of single ping adcp data.

test/single_pingADCPtest.m

@@ -0,0 +1,70 @@
+%Use toolbox to process single ping ADCP data.
+% problem with current version of toolbox is that the plotting of
+% single-ping data has a huge time overhead. Goal is to use the toolbox as
+% much as possible to get the data processed, but avoid the plotting until
+% the end - or all together.
+%
+% Bec Cowley, May/June, 2020
+%Have updated workhorseParse to do beam to ENU conversion
+
+% Set up:
+clear
+  % get the toolbox execution mode
+  mode = readProperty('toolbox.mode');
+toolboxVersion = ['2.6.6 - ' computer];
+auto = false;
+iMooring = [];
+nonUTCRawData = importManager(toolboxVersion, auto, iMooring);
+
+
+% add an index field to each data struct
+for k = 1:length(nonUTCRawData), nonUTCRawData{k}.meta.index = k; end
+
+%% preprocess data
+[ppData, cancel] = preprocessManager(nonUTCRawData, 'qc', mode, false);
+if cancel
+    rawData = nonUTCRawData;
+else
+    rawData = preprocessManager(nonUTCRawData, 'raw',  mode, true);  % only apply TIME to UTC conversion pre-processing routines, auto is true so that GUI only appears once
+end
+
+% save data set selection
+setIdx = 1:length(ppData);
+
+%% Determine thresholds using some low-overhead plots:
+adcpThresholds
+return
+%% Run autoQC tests, apply selected thresholds here:
+% do one at a time so that the results plot shows the fails for each
+% individual test.
+% run QC routines over raw data
+aqc = autoQCManager(ppData(setIdx));
+
+% if user interrupted process, return either pre-processed data (if no QC performed yet) or old QC data
+if isempty(aqc)
+    aqc = autoQCData(setIdx);
+end
+
+% otherwise return new QC data
+autoQCData(setIdx) = aqc;
+
+%set the qclevel flag so we are forced to load the historicalQCdataset in
+%GUI
+for Idx = 1:length(setIdx)
+    autoQCData{Idx}.meta.level = 0;
+end
+% now review the results of the flags applied with each test
+% comment out as required
+% adcpThresholdsResults(autoQCData,'surfacetest')
+adcpThresholdsResults(autoQCData,'echorange')
+% adcpThresholdsResults(autoQCData,'erv')
+% adcpThresholdsResults(autoQCData,'cmag')
+% adcpThresholdsResults(autoQCData,'echo')
+
+%% now we have the thresholds, run the toolbox as is, with the values determined.
+% need to delete the pqc file for the RDIs before doing the imos toobox as
+% I think that the values in pqc are overwriting edits in the
+% configuration. need to check. YES, BUG/
+
+%Next step, export to single ping netcdf and then re-import to matlab, bin
+%average and stack.