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ARROW-10224: [Python] Add support for Python 3.9 except macOS wheel and Windows wheel #8386

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terencehonles
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Adds support and testing for Python 3.9. I am looking for review as this change may have touched too many things, but I'm also looking to get the CI to test all the different environments.

H/T: @kou, the documentation and #5685 for helping me get this off the ground.

@@ -16,7 +16,7 @@ class ApacheArrow < Formula
depends_on "numpy"
depends_on "openssl@1.1"
depends_on "protobuf"
depends_on "python@3.8"
depends_on "python@3.9"
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I'm assuming homebrew should be on the latest Python? It does look like it's available now https://formulae.brew.sh/formula/python@3.9

@@ -110,6 +110,6 @@ set ARROW_TEST_DATA=%ARROW_SRC%\testing\data
%PYTHON_INTERPRETER% -c "import pyarrow.dataset" || exit /B

@rem run the python tests, but disable the cython because there is a linking
@rem issue on python 3.8
@rem issue on python 3.9
set PYARROW_TEST_CYTHON=OFF
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I don't know if this still applies, but I figured it probably would

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How about confirming it with CI?

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Sounds good to me, thanks for kicking things off. I had also create voltrondata-labs/ursabot#205 to adjust buildbot since I realized 3.9 wasn't being built just by me creating this PR.

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It looks like I "missed" the github workflows, but that might need to be done after the wheels are built and published as I haven't looked at what exactly are doing, and I kinda doubt they are building from source. I can open that up as a separate PR if that is helpful.

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kou commented Oct 8, 2020

@github-actions crossbow submit -g conda -g wheel

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github-actions bot commented Oct 8, 2020

Revision: da52256

Submitted crossbow builds: ursa-labs/crossbow @ actions-616

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It looks like cmake was already part of the quay.io/pypa/manylinux2014_x86_64:2020-10-06-b2ca7a1 and scripts/install_cmake.sh needed to be updated.

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kou commented Oct 8, 2020

@github-actions crossbow submit -g conda -g wheel

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Revision: 59496cc

Submitted crossbow builds: ursa-labs/crossbow @ actions-617

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Revision: 59496cc

Submitted crossbow builds: ursa-labs/crossbow @ actions-618

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kou commented Oct 8, 2020

(We need to wait a while until our comments are processed.)

@@ -31,7 +31,7 @@ addons:
- git
- openssl@1.1
- protobuf
- python@3.8
- python@3.9
- thrift
- wget
update: false
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I think it's possible Travis doesn't have Python 3.9 in it's homebrew cache, but I would expect a different error than it succeeds and then /usr/local/opt/python@3.8/libexec/bin/pip is just not found...

Nevermind! Apparently it's just a "warning" 😒 :

Warning: 'python@3.9' formula is unreadable: No available formula with the name "python@3.9"

https://travis-ci.org/github/ursa-labs/crossbow/builds/733873746#L145

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I reverted some of the OS X changes. I'm not sure I actually needed to change Python 3.8 there since it looks like that travis file is templated out to all OS X wheels and it is still using Python 3.8 in all of them. That's either a bug or that there's something else that's using the python_version that's also specified in the travis jobs (more likely the latter).

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pitrou commented Oct 8, 2020

Note that Numpy doesn't provide pre-compiled wheels for 3.9 currently.

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pitrou commented Oct 8, 2020

Also, conda-forge doesn't seem to be ready either.

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terencehonles commented Oct 8, 2020

Note that Numpy doesn't provide pre-compiled wheels for 3.9 currently.

Also, conda-forge doesn't seem to be ready either.

Yeah, that's fine. I'm not really in a rush, I just wanted to help to get things in place that we could move forward as soon as all of the dependencies are met (and to identify where things are and what is still missing)

It does build, and I was able to install everything in the project I am working on and run the tests (and discover other things that need to be updated), so that's really mainly what I was looking for. I figured I'd do it in public on a PR and use the built wheels instead of just building/testing locally and not sharing my work 🙂

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xhochy commented Oct 18, 2020

Also, conda-forge doesn't seem to be ready either.

Should be ready now.

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xhochy commented Oct 18, 2020

@github-actions crossbow submit -g conda

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Revision: 9ee37df

Submitted crossbow builds: ursa-labs/crossbow @ actions-651

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I pinned semver to 2.10.2 since it looks like there is a breaking change for archery/release.py that was committed in the last few days. I can look to create a PR for that, but I figured it probably shouldn't be rolled into this PR.

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Revision: 173d45e

Submitted crossbow builds: ursa-labs/crossbow @ actions-783

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+1

Thanks! I'll merge this.

Could you open JIRA issues for macOS wheel support and Windows wheel support?

@kou kou closed this in a2c732d Dec 13, 2020
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@kou When will the binaries be available in pypi? Thanks!

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kou commented Dec 15, 2020

We'll release them in 2021-01.

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@kou You're likely well aware, but if looking for e.g. manylinux2014 for 3.9:

$ curl -s 'https://api.github.com/repos/ursa-labs/crossbow/releases' | jq -r '.[]["assets"] | .[]["browser_download_url"]' | grep manylinux2014-cp39
https://github.com/ursa-labs/crossbow/releases/download/nightly-2020-12-18-0-azure-wheel-manylinux2014-cp39/pyarrow-2.1.0.dev412-cp39-cp39-manylinux2014_x86_64.whl
https://github.com/ursa-labs/crossbow/releases/download/nightly-2020-12-18-0-azure-wheel-manylinux2014-cp39/pyarrow-2.1.0.dev412.tar.gz

Looks like the api has a limit of 100 results per call, which doesn't go back far enough. Instead of dealing with pagination, it seems like gh may have a higher limit:

$ gh release list --repo=ursa-labs/crossbow --limit=1000 | grep manylinux2014-c
p39
nightly-2020-12-18-0-azure-wheel-manylinux2014-cp39             nightly-2020-12-18-0-azure-wheel-manylinux2014-cp39     2020-12-18T07:26:20Z
nightly-2020-12-17-0-azure-wheel-manylinux2014-cp39             nightly-2020-12-17-0-azure-wheel-manylinux2014-cp39     2020-12-17T07:33:01Z
actions-807-azure-wheel-manylinux2014-cp39              actions-807-azure-wheel-manylinux2014-cp39      2020-12-17T01:23:13Z
actions-804-azure-wheel-manylinux2014-cp39              actions-804-azure-wheel-manylinux2014-cp39      2020-12-16T23:00:37Z
actions-799-azure-wheel-manylinux2014-cp39              actions-799-azure-wheel-manylinux2014-cp39      2020-12-16T08:54:37Z
nightly-2020-12-16-0-azure-wheel-manylinux2014-cp39             nightly-2020-12-16-0-azure-wheel-manylinux2014-cp39     2020-12-16T06:58:23Z
actions-794-azure-wheel-manylinux2014-cp39              actions-794-azure-wheel-manylinux2014-cp39      2020-12-15T21:35:42Z
nightly-2020-12-15-0-azure-wheel-manylinux2014-cp39             nightly-2020-12-15-0-azure-wheel-manylinux2014-cp39     2020-12-15T06:22:33Z
nightly-2020-12-14-0-azure-wheel-manylinux2014-cp39             nightly-2020-12-14-0-azure-wheel-manylinux2014-cp39     2020-12-14T07:19:20Z
actions-783-azure-wheel-manylinux2014-cp39              actions-783-azure-wheel-manylinux2014-cp39      2020-12-12T22:57:41Z
actions-772-azure-wheel-manylinux2014-cp39              actions-772-azure-wheel-manylinux2014-cp39      2020-12-11T07:19:59Z
actions-767-azure-wheel-manylinux2014-cp39              actions-767-azure-wheel-manylinux2014-cp39      2020-12-10T20:02:41Z
actions-759-azure-wheel-manylinux2014-cp39              actions-759-azure-wheel-manylinux2014-cp39      2020-12-10T04:27:52Z
actions-758-azure-wheel-manylinux2014-cp39              actions-758-azure-wheel-manylinux2014-cp39      2020-12-09T23:30:31Z

From the name of the release you can construct the URL:

https://github.com/ursa-labs/crossbow/releases/actions-783-azure-wheel-manylinux2014-cp39

And from there you can find:

https://github.com/ursa-labs/crossbow/releases/download/actions-783-azure-wheel-manylinux2014-cp39/pyarrow-2.1.0.dev363-cp39-cp39-manylinux2014_x86_64.whl

From here you can install directly with pip:

$ python -m pip install https://github.com/ursa-labs/crossbow/releases/download/actions-783-azure-wheel-manylinux2014-cp39/pyarrow-2.1.0.dev363-cp39-cp39-manylinux2014_x86_64.whl

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Please be aware that's like running a nightly release, but if you are fine with that you can install a crossbow wheel. However, you probably want to just follow the instructions here https://arrow.apache.org/docs/python/install.html#installing-nightly-packages

TL;DR:

pip install --extra-index-url https://pypi.fury.io/arrow-nightlies/ \
    --pre pyarrow

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n8henrie commented Dec 18, 2020 via email

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Using the command mentioned by @terencehonles doesn't work for me.

(.venv) liyucheng@liyuchengdeMacBook-Air comments_generation % pip install --extra-index-url https://pypi.fury.io/arrow-nightlies/ --no-cache-dir --pre pyarrow
Looking in indexes: https://mirrors.aliyun.com/pypi/simple/, https://pypi.fury.io/arrow-nightlies/
Collecting pyarrow
  Downloading https://mirrors.aliyun.com/pypi/packages/fd/b7/78115614c4b227796cc87fff907930f6ae6dd999c5000d3d6ae5c2e54582/pyarrow-2.0.0.tar.gz (58.9 MB)
     |████▍                           | 8.2 MB 788 kB/s eta 0:01:05^C

This line still looking for pyarrow from the default indexes.

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kou commented Dec 30, 2020

Adding --verbose to pip command line may help you.

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@kou Thanks for your help. I think it may because the link https://pypi.fury.io/arrow-nightlies/ still lacks wheels for python3.9 on macos.

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kou commented Dec 30, 2020

We're still working on it at #8915.

cameronraysmith added a commit to cameronraysmith/notebooks that referenced this pull request Jan 3, 2021
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@kou Thanks for your help. I think it may because the link https://pypi.fury.io/arrow-nightlies/ still lacks wheels for python3.9 on macos.

@liyucheng09 yes that's correct, if you're impatient and OK with using a crossbow build as @n8henrie was attempting you can use https://github.com/ursa-labs/crossbow/branches/all?query=actions-686 which built both mavericks and high sierra as you can see in #8386 (comment)

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@terencehonles Thanks a lot. I installed pyarrorw sucessfully.

I was just curious that when I type pip install pyarrow the error log shows that it was stopped during install numpy, which is already installed in my environment (maybe the version is too advanced?).

I thought that figure it out may help me to understand deeper about python package installing process.

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@terencehonles Thanks a lot. I installed pyarrorw sucessfully.

I was just curious that when I type pip install pyarrow the error log shows that it was stopped during install numpy, which is already installed in my environment (maybe the version is too advanced?).

I thought that figure it out may help me to understand deeper about python package installing process.

I'm assuming you mean trying to install the most recently released pyarrow before you installed via crossbow? That's because pyarrow has a source distribution and you're trying to build from source. Pip will not have installed numpy at install time and is working to make isolated installs the default, if you have numpy already installed the version you have may be an issue, but I think it's more likely it's too old not too new. You can try using the flag --no-use-pep517 when running pip install pyarrow to see if your system has all the dependencies needed to build pyarrow (likely not, and that's why the CI is building it). Optionally you can make pip more verbose with -v.

pyarrow is probably not the easiest to learn about Python's build process on, but you should read their documentation if you would like to actually be able to build it from source.

kou pushed a commit that referenced this pull request Jan 6, 2021
… wheels

Picking back up from #8386 in case I can handle this or someone else wants to work off of it.

Closes #8915 from terencehonles/arrow-10904

Authored-by: Terence D. Honles <terence@honles.com>
Signed-off-by: Sutou Kouhei <kou@clear-code.com>
adamchainz added a commit to adamchainz/arrow that referenced this pull request May 10, 2021
lidavidm pushed a commit that referenced this pull request May 10, 2021
Missed in #8386.

Closes #10286 from adamchainz/patch-1

Authored-by: Adam Johnson <me@adamj.eu>
Signed-off-by: David Li <li.davidm96@gmail.com>
GeorgeAp pushed a commit to sirensolutions/arrow that referenced this pull request Jun 7, 2021
…nd Windows wheel

Adds support and testing for Python 3.9. I am looking for review as this change may have touched too many things, but I'm also looking to get the CI to test all the different environments.

H/T: @kou, the documentation and apache#5685 for helping me get this off the ground.

Closes apache#8386 from terencehonles/arrow-10224

Authored-by: Terence D. Honles <terence@honles.com>
Signed-off-by: Sutou Kouhei <kou@clear-code.com>
GeorgeAp pushed a commit to sirensolutions/arrow that referenced this pull request Jun 7, 2021
… wheels

Picking back up from apache#8386 in case I can handle this or someone else wants to work off of it.

Closes apache#8915 from terencehonles/arrow-10904

Authored-by: Terence D. Honles <terence@honles.com>
Signed-off-by: Sutou Kouhei <kou@clear-code.com>
michalursa pushed a commit to michalursa/arrow that referenced this pull request Jun 13, 2021
Missed in apache#8386.

Closes apache#10286 from adamchainz/patch-1

Authored-by: Adam Johnson <me@adamj.eu>
Signed-off-by: David Li <li.davidm96@gmail.com>
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