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[schema] Updating the base metric schema #5453

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@john-bodley john-bodley commented Jul 20, 2018

We've noticed a number of anomalies in our database caused by ill-defined forms and/or table schema definitions. This PR resolves a number of issues related to the metrics and sql_metrics table including:

  • Adds the missing legacy constraint to the sql_metrics table which was added in PR Adding YAML Import-Export for Datasources to CLI #3978 but didn't contain the corresponding migration. Note this requires reducing the size of the metric_name column for viability purposes.
  • Reduces the size of metric_name column for the metrics table in the model which is inline with the previous migration.
  • Ensures that the metric_name column is non-NULL.
  • Ensures that the metrics.json and sql_metrics.expression columns are non-NULL.
  • Deletes any orphaned records, i.e., those which are not associated with a datasource/table.

The uniqueness constraint was added to the metrics table in this migration.

Note this migration will fail if the metrics.metric_name, metrics.json, sql_metrics.metric_name, or sql_metrics.expression column is NULL. One must manually fix these records as programmatically trying to remedy these invalid records is difficult as the intent is unclear and the columns may function (from a query standpoint) if the underlying column expression is defined. The following queries determine which records are problematic:

SELECT 
    *
FROM 
    metrics
WHERE 
    metric_name IS NULL OR 
    json IS NULL

and

SELECT 
    *
FROM 
    sql_metrics
WHERE 
    metric_name IS NULL OR 
    expression IS NULL

Additionally this migration will truncate the sql_metrics.metric_name column from 512 to 255 characters. The following query determines which records are problematic:

SELECT
    *
FROM 
    sql_metrics
WHERE
    CHAR_LENGTH(metric_name) > 255

Finally this migration will fail if the sql_metrics table is corrupt in terms of the uniqueness constraint. One must manually consolidate duplicate or non-valid records given there's no way of programmatically removing invalid records. The following query determines whether there are duplicates:

SELECT 
    table_id, 
    metric_name,
    COUNT(1)
FROM 
    sql_metrics
GROUP BY 
    1, 2
HAVING 
    COUNT(1) > 1
ORDER BY 
    COUNT(1) DESC

Note this PR is gated by #5445 and #7084 which ensures that empty strings associated with form-data wont persist in the database and is necessary for ensuring that the relevant entries are non-NULL.

to: @fabianmenges @graceguo-supercat @michellethomas @mistercrunch @timifasubaa

@john-bodley john-bodley force-pushed the john-bodley-update-base-metrics branch from 5567297 to 59369d0 Compare July 21, 2018 05:00
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codecov-io commented Jul 21, 2018

Codecov Report

Merging #5453 into master will not change coverage.
The diff coverage is 100%.

Impacted file tree graph

@@           Coverage Diff           @@
##           master    #5453   +/-   ##
=======================================
  Coverage   64.92%   64.92%           
=======================================
  Files         428      428           
  Lines       20960    20960           
  Branches     2333     2333           
=======================================
  Hits        13608    13608           
  Misses       7228     7228           
  Partials      124      124
Impacted Files Coverage Δ
superset/connectors/druid/models.py 82.49% <100%> (ø) ⬆️
superset/connectors/sqla/models.py 81.86% <100%> (ø) ⬆️
superset/connectors/base/models.py 89.89% <100%> (ø) ⬆️

Continue to review full report at Codecov.

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@john-bodley john-bodley force-pushed the john-bodley-update-base-metrics branch 2 times, most recently from 7bc7bbe to 33faad6 Compare July 21, 2018 05:59
@john-bodley john-bodley force-pushed the john-bodley-update-base-metrics branch from 856f739 to 1fe2276 Compare April 25, 2019 01:06
@john-bodley john-bodley merged commit f488a32 into apache:master Apr 25, 2019
@john-bodley john-bodley deleted the john-bodley-update-base-metrics branch April 25, 2019 04:50
xtinec pushed a commit that referenced this pull request Apr 29, 2019
* filter out all nan series (#7313)

* improve not rich tooltip (#7345)

* Create issue_label_bot.yaml (#7341)

* fix: do not save colors without a color scheme (#7347)

* [wtforms] Strip leading/trailing whitespace (#7084)

* [schema] Updating the datasources schema (#5451)

* limit tables/views returned if schema is not provided (#7358)

* limit tables/views returned if schema is not provided

* fix typo

* improve code performance

* handle the case when table name or view name does not present a schema

* Add type anno (#7342)

* Updated local dev instructions to include missing step

* First pass at type annotations

* [schema] Updating the base column schema (#5452)

* Update 937d04c16b64_update_datasources.py (#7361)

* Feature flag for client cache (#7348)

* Feature flag for client cache

* Fix integration test

* Revert "Fix integration test"

This reverts commit 58434ab.

* Feature flag for client cache

* Fix integration tests

* Add feature flag to config.py

* Add another feature check

* Fix more integration tests

* Fix raw HTML in SliceAdder (#7338)

* remove backendSync.json (#7331)

* [bubbles] issue when using duplicated metrics (#7087)

* SUPERSET-7: Docker compose config version breaks on Ubuntu 16.04 (#7359)

* SUPERSET-8: Update text in docs copyright footer (#7360)

* SUPERSET-7: Docker compose config version breaks on Ubuntu 16.04

* SUPERSET-8: Extra text in docs copyright footer

* [schema] Adding commits and removing unnecessary foreign-key definitions (#7371)

*  Store last selected dashboard in sessionStorage (#7181)

* Store last selected dashboard in sessionStorage

* Fix tests

* [schema] Updating the base metric schema (#5453)

* Fix NoneType bug & fill the test recipients with original recipients if empty (#7365)
xtinec pushed a commit that referenced this pull request May 1, 2019
* Merge lastest from master into lyft-release-sp8 (#7405)

* filter out all nan series (#7313)

* improve not rich tooltip (#7345)

* Create issue_label_bot.yaml (#7341)

* fix: do not save colors without a color scheme (#7347)

* [wtforms] Strip leading/trailing whitespace (#7084)

* [schema] Updating the datasources schema (#5451)

* limit tables/views returned if schema is not provided (#7358)

* limit tables/views returned if schema is not provided

* fix typo

* improve code performance

* handle the case when table name or view name does not present a schema

* Add type anno (#7342)

* Updated local dev instructions to include missing step

* First pass at type annotations

* [schema] Updating the base column schema (#5452)

* Update 937d04c16b64_update_datasources.py (#7361)

* Feature flag for client cache (#7348)

* Feature flag for client cache

* Fix integration test

* Revert "Fix integration test"

This reverts commit 58434ab.

* Feature flag for client cache

* Fix integration tests

* Add feature flag to config.py

* Add another feature check

* Fix more integration tests

* Fix raw HTML in SliceAdder (#7338)

* remove backendSync.json (#7331)

* [bubbles] issue when using duplicated metrics (#7087)

* SUPERSET-7: Docker compose config version breaks on Ubuntu 16.04 (#7359)

* SUPERSET-8: Update text in docs copyright footer (#7360)

* SUPERSET-7: Docker compose config version breaks on Ubuntu 16.04

* SUPERSET-8: Extra text in docs copyright footer

* [schema] Adding commits and removing unnecessary foreign-key definitions (#7371)

*  Store last selected dashboard in sessionStorage (#7181)

* Store last selected dashboard in sessionStorage

* Fix tests

* [schema] Updating the base metric schema (#5453)

* Fix NoneType bug & fill the test recipients with original recipients if empty (#7365)

* feat: see Presto row and array data types (#7391)

* feat: see Presto row and array data types

* fix: address PR comments

* fix: lint and build issues

* fix: add types

* add stronger type hints where possible

* fix: lint issues and add select_star func in Hive

* add missing pkg init

* fix: build issues

* fix: pylint issues

* fix: use logging instead of print
betodealmeida pushed a commit that referenced this pull request May 3, 2019
* Merge lastest from master into lyft-release-sp8 (#7405)

* filter out all nan series (#7313)

* improve not rich tooltip (#7345)

* Create issue_label_bot.yaml (#7341)

* fix: do not save colors without a color scheme (#7347)

* [wtforms] Strip leading/trailing whitespace (#7084)

* [schema] Updating the datasources schema (#5451)

* limit tables/views returned if schema is not provided (#7358)

* limit tables/views returned if schema is not provided

* fix typo

* improve code performance

* handle the case when table name or view name does not present a schema

* Add type anno (#7342)

* Updated local dev instructions to include missing step

* First pass at type annotations

* [schema] Updating the base column schema (#5452)

* Update 937d04c16b64_update_datasources.py (#7361)

* Feature flag for client cache (#7348)

* Feature flag for client cache

* Fix integration test

* Revert "Fix integration test"

This reverts commit 58434ab.

* Feature flag for client cache

* Fix integration tests

* Add feature flag to config.py

* Add another feature check

* Fix more integration tests

* Fix raw HTML in SliceAdder (#7338)

* remove backendSync.json (#7331)

* [bubbles] issue when using duplicated metrics (#7087)

* SUPERSET-7: Docker compose config version breaks on Ubuntu 16.04 (#7359)

* SUPERSET-8: Update text in docs copyright footer (#7360)

* SUPERSET-7: Docker compose config version breaks on Ubuntu 16.04

* SUPERSET-8: Extra text in docs copyright footer

* [schema] Adding commits and removing unnecessary foreign-key definitions (#7371)

*  Store last selected dashboard in sessionStorage (#7181)

* Store last selected dashboard in sessionStorage

* Fix tests

* [schema] Updating the base metric schema (#5453)

* Fix NoneType bug & fill the test recipients with original recipients if empty (#7365)

* feat: see Presto row and array data types (#7391)

* feat: see Presto row and array data types

* fix: address PR comments

* fix: lint and build issues

* fix: add types

* Incorporate feedback from initial PR (prematurely merged to lyft-release-sp8) (#7415)

* add stronger type hints where possible

* fix: lint issues and add select_star func in Hive

* add missing pkg init

* fix: build issues

* fix: pylint issues

* fix: use logging instead of print

* feat: view presto row objects in data grid

* fix: address feedback

* fix: spacing
betodealmeida pushed a commit that referenced this pull request May 3, 2019
* Merge lastest from master into lyft-release-sp8 (#7405)

* filter out all nan series (#7313)

* improve not rich tooltip (#7345)

* Create issue_label_bot.yaml (#7341)

* fix: do not save colors without a color scheme (#7347)

* [wtforms] Strip leading/trailing whitespace (#7084)

* [schema] Updating the datasources schema (#5451)

* limit tables/views returned if schema is not provided (#7358)

* limit tables/views returned if schema is not provided

* fix typo

* improve code performance

* handle the case when table name or view name does not present a schema

* Add type anno (#7342)

* Updated local dev instructions to include missing step

* First pass at type annotations

* [schema] Updating the base column schema (#5452)

* Update 937d04c16b64_update_datasources.py (#7361)

* Feature flag for client cache (#7348)

* Feature flag for client cache

* Fix integration test

* Revert "Fix integration test"

This reverts commit 58434ab.

* Feature flag for client cache

* Fix integration tests

* Add feature flag to config.py

* Add another feature check

* Fix more integration tests

* Fix raw HTML in SliceAdder (#7338)

* remove backendSync.json (#7331)

* [bubbles] issue when using duplicated metrics (#7087)

* SUPERSET-7: Docker compose config version breaks on Ubuntu 16.04 (#7359)

* SUPERSET-8: Update text in docs copyright footer (#7360)

* SUPERSET-7: Docker compose config version breaks on Ubuntu 16.04

* SUPERSET-8: Extra text in docs copyright footer

* [schema] Adding commits and removing unnecessary foreign-key definitions (#7371)

*  Store last selected dashboard in sessionStorage (#7181)

* Store last selected dashboard in sessionStorage

* Fix tests

* [schema] Updating the base metric schema (#5453)

* Fix NoneType bug & fill the test recipients with original recipients if empty (#7365)

* feat: see Presto row and array data types (#7391)

* feat: see Presto row and array data types

* fix: address PR comments

* fix: lint and build issues

* fix: add types

* Incorporate feedback from initial PR (prematurely merged to lyft-release-sp8) (#7415)

* add stronger type hints where possible

* fix: lint issues and add select_star func in Hive

* add missing pkg init

* fix: build issues

* fix: pylint issues

* fix: use logging instead of print

* feat: view presto row objects in data grid

* fix: address feedback

* fix: spacing

* Workaround for no results returned (#7442)

* feat: view presto row objects in data grid (#7436)

* feat: view presto row objects in data grid

* fix: address feedback

* fix: spacing

* feat: Scheduling queries from SQL Lab (#7416)

* Lightweight pipelines POC

* Add docs

* Minor fixes

* Remove Lyft URL

* Use enum

* Minor fix

* Fix unit tests

* Mark props as required
xtinec pushed a commit that referenced this pull request May 10, 2019
* filter out all nan series (#7313)

* improve not rich tooltip (#7345)

* Create issue_label_bot.yaml (#7341)

* fix: do not save colors without a color scheme (#7347)

* [wtforms] Strip leading/trailing whitespace (#7084)

* [schema] Updating the datasources schema (#5451)

* limit tables/views returned if schema is not provided (#7358)

* limit tables/views returned if schema is not provided

* fix typo

* improve code performance

* handle the case when table name or view name does not present a schema

* Add type anno (#7342)

* Updated local dev instructions to include missing step

* First pass at type annotations

* [schema] Updating the base column schema (#5452)

* Update 937d04c16b64_update_datasources.py (#7361)

* Feature flag for client cache (#7348)

* Feature flag for client cache

* Fix integration test

* Revert "Fix integration test"

This reverts commit 58434ab.

* Feature flag for client cache

* Fix integration tests

* Add feature flag to config.py

* Add another feature check

* Fix more integration tests

* Fix raw HTML in SliceAdder (#7338)

* remove backendSync.json (#7331)

* [bubbles] issue when using duplicated metrics (#7087)

* SUPERSET-7: Docker compose config version breaks on Ubuntu 16.04 (#7359)

* SUPERSET-8: Update text in docs copyright footer (#7360)

* SUPERSET-7: Docker compose config version breaks on Ubuntu 16.04

* SUPERSET-8: Extra text in docs copyright footer

* [schema] Adding commits and removing unnecessary foreign-key definitions (#7371)

*  Store last selected dashboard in sessionStorage (#7181)

* Store last selected dashboard in sessionStorage

* Fix tests

* [schema] Updating the base metric schema (#5453)

* Fix NoneType bug & fill the test recipients with original recipients if empty (#7365)

* Added living goods as among the users of Superset (#7407)

* Added living goods as among the users of Superset

Living Goods is a non profit organisation with operation in africa and the middle east. We work in community health use data heavily on day to day. Superset is our platform of choice for dashboards.

* Update README.md

* [dashboard] allow user re-order top-level tabs (#7390)

* [SQL Lab] Increase timeout threshold for offline check (#7411)

* Bump FAB to 2.0.0 (#7323)

* Bump FAB to 2.0.0

* [tests] whitelist SecurityApi login and refresh endpoints

* [style] Fix, C812 missing trailing commas

* [security] Remove SUPERSET_UPDATE_PERMS flag

Registering sources needs to be performed after the views are
initialized on UPDATE_PERMS=False configuration

* [docs] New, FAB_UPDATE_PERMS and flask fab cli

* [docs] Fix, db upgrade needs to come first, create-admin needs a db

* [cli] New, superset init bootstraps all permissions for FAB and Superset

* [style] Fix, flakes

* [annotations] Improves UX on annotation validation, start_dttm, end_dttm (#7326)

* Setting renderTrigger on label_colors (#7410)

* Refactor out controlUtils.js module + unit tests (#7350)

* [WiP]refactor out a controlUtils.js file

* unit tests

* add missing license

* Addressing comments

* feature: see Presto row and array data types (#7413)

* Merge lastest from master into lyft-release-sp8 (#7405)

* filter out all nan series (#7313)

* improve not rich tooltip (#7345)

* Create issue_label_bot.yaml (#7341)

* fix: do not save colors without a color scheme (#7347)

* [wtforms] Strip leading/trailing whitespace (#7084)

* [schema] Updating the datasources schema (#5451)

* limit tables/views returned if schema is not provided (#7358)

* limit tables/views returned if schema is not provided

* fix typo

* improve code performance

* handle the case when table name or view name does not present a schema

* Add type anno (#7342)

* Updated local dev instructions to include missing step

* First pass at type annotations

* [schema] Updating the base column schema (#5452)

* Update 937d04c16b64_update_datasources.py (#7361)

* Feature flag for client cache (#7348)

* Feature flag for client cache

* Fix integration test

* Revert "Fix integration test"

This reverts commit 58434ab.

* Feature flag for client cache

* Fix integration tests

* Add feature flag to config.py

* Add another feature check

* Fix more integration tests

* Fix raw HTML in SliceAdder (#7338)

* remove backendSync.json (#7331)

* [bubbles] issue when using duplicated metrics (#7087)

* SUPERSET-7: Docker compose config version breaks on Ubuntu 16.04 (#7359)

* SUPERSET-8: Update text in docs copyright footer (#7360)

* SUPERSET-7: Docker compose config version breaks on Ubuntu 16.04

* SUPERSET-8: Extra text in docs copyright footer

* [schema] Adding commits and removing unnecessary foreign-key definitions (#7371)

*  Store last selected dashboard in sessionStorage (#7181)

* Store last selected dashboard in sessionStorage

* Fix tests

* [schema] Updating the base metric schema (#5453)

* Fix NoneType bug & fill the test recipients with original recipients if empty (#7365)

* feat: see Presto row and array data types (#7391)

* feat: see Presto row and array data types

* fix: address PR comments

* fix: lint and build issues

* fix: add types

* add stronger type hints where possible

* fix: lint issues and add select_star func in Hive

* add missing pkg init

* fix: build issues

* fix: pylint issues

* fix: use logging instead of print

* Removed --console-log and superset runserver (#7421)

* Fixes dashboard export button missing download and #7353 (#7427)

* Added additional German translations to string file (#6604)

* Added additional German translations to string file

Updates to German translation files as per directions

* Removed messages.json

* [fix] Fixing SQL parsing issue (#7374)

* add chinese translate (#7402)

* Quick fix to address deadlock issue (#7434)

* feat: view presto row objects in data grid (#7445)

* Merge lastest from master into lyft-release-sp8 (#7405)

* filter out all nan series (#7313)

* improve not rich tooltip (#7345)

* Create issue_label_bot.yaml (#7341)

* fix: do not save colors without a color scheme (#7347)

* [wtforms] Strip leading/trailing whitespace (#7084)

* [schema] Updating the datasources schema (#5451)

* limit tables/views returned if schema is not provided (#7358)

* limit tables/views returned if schema is not provided

* fix typo

* improve code performance

* handle the case when table name or view name does not present a schema

* Add type anno (#7342)

* Updated local dev instructions to include missing step

* First pass at type annotations

* [schema] Updating the base column schema (#5452)

* Update 937d04c16b64_update_datasources.py (#7361)

* Feature flag for client cache (#7348)

* Feature flag for client cache

* Fix integration test

* Revert "Fix integration test"

This reverts commit 58434ab.

* Feature flag for client cache

* Fix integration tests

* Add feature flag to config.py

* Add another feature check

* Fix more integration tests

* Fix raw HTML in SliceAdder (#7338)

* remove backendSync.json (#7331)

* [bubbles] issue when using duplicated metrics (#7087)

* SUPERSET-7: Docker compose config version breaks on Ubuntu 16.04 (#7359)

* SUPERSET-8: Update text in docs copyright footer (#7360)

* SUPERSET-7: Docker compose config version breaks on Ubuntu 16.04

* SUPERSET-8: Extra text in docs copyright footer

* [schema] Adding commits and removing unnecessary foreign-key definitions (#7371)

*  Store last selected dashboard in sessionStorage (#7181)

* Store last selected dashboard in sessionStorage

* Fix tests

* [schema] Updating the base metric schema (#5453)

* Fix NoneType bug & fill the test recipients with original recipients if empty (#7365)

* feat: see Presto row and array data types (#7391)

* feat: see Presto row and array data types

* fix: address PR comments

* fix: lint and build issues

* fix: add types

* Incorporate feedback from initial PR (prematurely merged to lyft-release-sp8) (#7415)

* add stronger type hints where possible

* fix: lint issues and add select_star func in Hive

* add missing pkg init

* fix: build issues

* fix: pylint issues

* fix: use logging instead of print

* feat: view presto row objects in data grid

* fix: address feedback

* fix: spacing

* feat: Scheduling queries from SQL Lab (#7416) (#7446)

* Merge lastest from master into lyft-release-sp8 (#7405)

* filter out all nan series (#7313)

* improve not rich tooltip (#7345)

* Create issue_label_bot.yaml (#7341)

* fix: do not save colors without a color scheme (#7347)

* [wtforms] Strip leading/trailing whitespace (#7084)

* [schema] Updating the datasources schema (#5451)

* limit tables/views returned if schema is not provided (#7358)

* limit tables/views returned if schema is not provided

* fix typo

* improve code performance

* handle the case when table name or view name does not present a schema

* Add type anno (#7342)

* Updated local dev instructions to include missing step

* First pass at type annotations

* [schema] Updating the base column schema (#5452)

* Update 937d04c16b64_update_datasources.py (#7361)

* Feature flag for client cache (#7348)

* Feature flag for client cache

* Fix integration test

* Revert "Fix integration test"

This reverts commit 58434ab.

* Feature flag for client cache

* Fix integration tests

* Add feature flag to config.py

* Add another feature check

* Fix more integration tests

* Fix raw HTML in SliceAdder (#7338)

* remove backendSync.json (#7331)

* [bubbles] issue when using duplicated metrics (#7087)

* SUPERSET-7: Docker compose config version breaks on Ubuntu 16.04 (#7359)

* SUPERSET-8: Update text in docs copyright footer (#7360)

* SUPERSET-7: Docker compose config version breaks on Ubuntu 16.04

* SUPERSET-8: Extra text in docs copyright footer

* [schema] Adding commits and removing unnecessary foreign-key definitions (#7371)

*  Store last selected dashboard in sessionStorage (#7181)

* Store last selected dashboard in sessionStorage

* Fix tests

* [schema] Updating the base metric schema (#5453)

* Fix NoneType bug & fill the test recipients with original recipients if empty (#7365)

* feat: see Presto row and array data types (#7391)

* feat: see Presto row and array data types

* fix: address PR comments

* fix: lint and build issues

* fix: add types

* Incorporate feedback from initial PR (prematurely merged to lyft-release-sp8) (#7415)

* add stronger type hints where possible

* fix: lint issues and add select_star func in Hive

* add missing pkg init

* fix: build issues

* fix: pylint issues

* fix: use logging instead of print

* feat: view presto row objects in data grid

* fix: address feedback

* fix: spacing

* Workaround for no results returned (#7442)

* feat: view presto row objects in data grid (#7436)

* feat: view presto row objects in data grid

* fix: address feedback

* fix: spacing

* feat: Scheduling queries from SQL Lab (#7416)

* Lightweight pipelines POC

* Add docs

* Minor fixes

* Remove Lyft URL

* Use enum

* Minor fix

* Fix unit tests

* Mark props as required

* feat: Add `validate_sql_json` endpoint for checking that a given sql query is valid for the chosen database (#7422) (#7462)

merge from lyft-release-sp8 to master

* Adds missing metric sum__SP_RUR_TOTL (#7452)

* Late import for optional lib pyhive (#7471)

* Late import for optional lib pyhive

* fix

* fix: calendar heatmap examples (#7375)

Fixing a set of examples that trip on ValueError vs TypeError

* bugfix: Improve support for special characters in schema and table names (#7297)

* Bugfix to SQL Lab to support tables and schemas with characters that require quoting

* Remove debugging prints

* Add uri encoding to secondary tables call

* Quote schema names for presto

* Quote selected_schema on Snowflake, MySQL and Hive

* Remove redundant parens

* Add python unit tests

* Add js unit test

* Fix flake8 linting error

* [dashboard] After update filter, trigger new queries when charts are visible (#7233)

* trigger query when chart is visible

* add integration test

* fix: alter sql columns to long text #7463 (#7476)

Merge lyft-release-sp8@7bfe7bc to master

* Refactor ConsoleLog (#7428)

* Revised Chinese translation (#7464)

* add chinese translate

* edit chinese translation

* druid connector: avoid using 'dimensions' for scan queries (#7377)

After the following PyDruid change (contained in version 0.5.2)
the Superset Histogram charts rendered with Druid data are
broken:

druid-io/pydruid@0a59a70

Bump the pydruid requirements accordingly in setup.py

Issue: #7368
@mistercrunch mistercrunch added 🏷️ bot A label used by `supersetbot` to keep track of which PR where auto-tagged with release labels 🚢 0.34.0 labels Feb 27, 2024
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