Skip to content
@applied-systems-biology

Applied Systems Biology - HKI Jena, Germany

Research group

Popular repositories Loading

  1. jipipe jipipe Public

    Java Image Processing Pipeline (JIPipe) is a graphical batch processing language for the ImageJ ecosystem

    Java 12 2

  2. Dynamic_SPHARM Dynamic_SPHARM Public

    Software for dynamic spherical harmonic analysis

    Python 7

  3. DeconvTest DeconvTest Public

    A python-based simulation framework that allows the user to quantify and compare the performance of different deconvolution methods.

    Jupyter Notebook 6 2

  4. HelperLib HelperLib Public

    Helper functions for working with files and parallel processing

    Python 2 1

  5. misa-framework misa-framework Public

    Website & downloads repository of MISA++

    HTML 2 2

  6. amit amit Public

    This framework allows the segmentation, classification and tracking of immune cells such as PMNs or macrophages and fungal cells in migration and confrontation assays

    C++ 2 2

Repositories

Showing 10 of 58 repositories
  • Spatial_distancing_PDE_model Public

    A computational model for simulating molecular host-pathogen interactions and specifically pathogen immune evasion via spatial distancing.

    applied-systems-biology/Spatial_distancing_PDE_model’s past year of commit activity
    C++ 0 BSD-2-Clause 0 0 0 Updated Oct 17, 2024
  • jipipe Public

    Java Image Processing Pipeline (JIPipe) is a graphical batch processing language for the ImageJ ecosystem

    applied-systems-biology/jipipe’s past year of commit activity
    Java 12 MIT 2 0 4 Updated Sep 24, 2024
  • hABM-AlveolusModel-v2 Public

    A computational model for simulating the early innate immune defense against the human-pathogenic fungus Aspergillus fumigatus in one human alveolus

    applied-systems-biology/hABM-AlveolusModel-v2’s past year of commit activity
    Jupyter Notebook 0 BSD-2-Clause 1 0 0 Updated Sep 5, 2024
  • misa-framework Public

    Website & downloads repository of MISA++

    applied-systems-biology/misa-framework’s past year of commit activity
    HTML 2 2 0 10 Updated Jun 18, 2024
  • JIPipe-Repositories Public

    Default repositories for JIPipe

    applied-systems-biology/JIPipe-Repositories’s past year of commit activity
    0 0 0 0 Updated May 22, 2024
  • applied-systems-biology/Nissle-binding’s past year of commit activity
    0 0 0 0 Updated Apr 30, 2024
  • jipipe-launcher Public archive

    Launcher application for JIPipe

    applied-systems-biology/jipipe-launcher’s past year of commit activity
    Java 0 MIT 0 0 0 Updated Apr 18, 2024
  • jipipe-installer-windows Public archive

    Windows installer for the JIPipe Launcher

    applied-systems-biology/jipipe-installer-windows’s past year of commit activity
    C# 0 MIT 0 0 0 Updated Mar 12, 2024
  • klebsiella-rna-rna-interactome Public

    Code for the paper "The global RNA-RNA interactome of Klebsiella pneumoniae unveils a small RNA regulator of cell division" by Ruhland et al

    applied-systems-biology/klebsiella-rna-rna-interactome’s past year of commit activity
    0 BSD-2-Clause 0 0 0 Updated Feb 7, 2024
  • applied-systems-biology/MRP2_analysis_liver_confocal’s past year of commit activity
    0 BSD-2-Clause 0 0 0 Updated Dec 21, 2023

Top languages

Loading…

Most used topics

Loading…