feat: Update archived workflow column to be JSON. Closes #2133 #2152
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|
alexec
commented
Feb 4, 2020
| ansiSQLChange(`alter table argo_archived_workflows modify column workflow json not null`), | ||
| ansiSQLChange(`alter table argo_archived_workflows alter column workflow type json using workflow::json`), | ||
| ), | ||
| ternary(dbType == "mysql", |
sarabala1979
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Feb 4, 2020
MasonM
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Oct 17, 2024
…j#13601 As explained in argoproj#13601 (comment), I believe argoproj#12912 introduced a performance regression when listing workflows for PostgreSQL users. Reverting that PR could re-introduce the memory issues mentioned in the PR description, so instead this mitigates the impact by converting the `workflow` column to be of type `jsonb`. Initially `workflow` was of type `text`, and was migrated to `json` in argoproj#2152. I'm not sure why `jsonb` wasn't chosen, but [based on this comment in the linked issue](argoproj#2133 (comment)), I think it was simply an oversight. Here's the relevant docs (https://www.postgresql.org/docs/current/datatype-json.html): > The json and jsonb data types accept almost identical sets of values as input. The major practical difference is one of efficiency. The json data type stores an exact copy of the input text, which processing functions must reparse on each execution; while jsonb data is stored in a decomposed binary format that makes it slightly slower to input due to added conversion overhead, but significantly faster to process, since no reparsing is needed. jsonb also supports indexing, which can be a significant advantage. > > Because the json type stores an exact copy of the input text, it will preserve semantically-insignificant white space between tokens, as well as the order of keys within JSON objects. Also, if a JSON object within the value contains the same key more than once, all the key/value pairs are kept. (The processing functions consider the last value as the operative one.) By contrast, jsonb does not preserve white space, does not preserve the order of object keys, and does not keep duplicate object keys. If duplicate keys are specified in the input, only the last value is kept. > > In general, most applications should prefer to store JSON data as jsonb, unless there are quite specialized needs, such as legacy assumptions about ordering of object keys. I'm pretty sure we don't care about key order or whitespace. We do care somewhat about insertion speed, but archived workflows are read much more frequently than written, so a slight reduction in write speed that gives a large improvement in read speed is a good tradeoff. Here's steps to test this: 1. Use argoproj#13715 to generate 100,000 randomized workflows, with https://gist.github.com/MasonM/52932ff6644c3c0ccea9e847780bfd90 as a template: ``` $ time go run ./hack/db fake-archived-workflows --template "@very-large-workflow.yaml" --rows 100000 Using seed 1935828722624432788 Clusters: [default] Namespaces: [argo] Inserted 100000 rows real 18m35.316s user 3m2.447s sys 0m44.972s ``` 2. Run the benchmarks using argoproj#13767: ``` make BenchmarkWorkflowArchive > postgres_before_10000_workflows.txt ``` 3. Run the migration the DB CLI: ``` $ time go run ./hack/db migrate INFO[0000] Migrating database schema clusterName=default dbType=postgres INFO[0000] applying database change change="alter table argo_archived_workflows alter column workflow set data type jsonb using workflow::jsonb" changeSchemaVersion=60 2024/10/17 18:07:42 Session ID: 00001 Query: alter table argo_archived_workflows alter column workflow set data type jsonb using workflow::jsonb Stack: fmt.(*pp).handleMethods@/usr/local/go/src/fmt/print.go:673 fmt.(*pp).printArg@/usr/local/go/src/fmt/print.go:756 fmt.(*pp).doPrint@/usr/local/go/src/fmt/print.go:1208 fmt.Append@/usr/local/go/src/fmt/print.go:289 log.(*Logger).Print.func1@/usr/local/go/src/log/log.go:261 log.(*Logger).output@/usr/local/go/src/log/log.go:238 log.(*Logger).Print@/usr/local/go/src/log/log.go:260 github.com/argoproj/argo-workflows/v3/persist/sqldb.ansiSQLChange.apply@/home/vscode/go/src/github.com/argoproj/argo-workflows/persist/sqldb/ansi_sql_change.go:11 github.com/argoproj/argo-workflows/v3/persist/sqldb.migrate.applyChange.func1@/home/vscode/go/src/github.com/argoproj/argo-workflows/persist/sqldb/migrate.go:295 github.com/argoproj/argo-workflows/v3/persist/sqldb.migrate.applyChange@/home/vscode/go/src/github.com/argoproj/argo-workflows/persist/sqldb/migrate.go:284 github.com/argoproj/argo-workflows/v3/persist/sqldb.migrate.Exec@/home/vscode/go/src/github.com/argoproj/argo-workflows/persist/sqldb/migrate.go:273 main.NewMigrateCommand.func1@/home/vscode/go/src/github.com/argoproj/argo-workflows/hack/db/main.go:50 github.com/spf13/cobra.(*Command).execute@/home/vscode/go/pkg/mod/github.com/spf13/cobra@v1.8.1/command.go:985 github.com/spf13/cobra.(*Command).ExecuteC@/home/vscode/go/pkg/mod/github.com/spf13/cobra@v1.8.1/command.go:1117 github.com/spf13/cobra.(*Command).Execute@/home/vscode/go/pkg/mod/github.com/spf13/cobra@v1.8.1/command.go:1041 main.main@/home/vscode/go/src/github.com/argoproj/argo-workflows/hack/db/main.go:39 runtime.main@/usr/local/go/src/runtime/proc.go:272 runtime.goexit@/usr/local/go/src/runtime/asm_amd64.s:1700 Rows affected: 0 Error: upper: slow query Time taken: 69.12755s Context: context.Background real 1m10.087s user 0m1.541s sys 0m0.410s ``` 2. Re-run the benchmarks: ``` make BenchmarkWorkflowArchive > postgres_after_10000_workflows.txt ``` 4. Compare results using [benchstat](https://pkg.go.dev/golang.org/x/perf/cmd/benchstat): ``` $ benchstat postgres_before_10000_workflows3.txt postgres_after_10000_workflows2.txt goos: linux goarch: amd64 pkg: github.com/argoproj/argo-workflows/v3/test/e2e cpu: 12th Gen Intel(R) Core(TM) i5-12400 │ postgres_before_10000_workflows3.txt │ postgres_after_10000_workflows2.txt │ │ sec/op │ sec/op vs base │ WorkflowArchive/ListWorkflows-12 183.83m ± ∞ ¹ 24.69m ± ∞ ¹ ~ (p=1.000 n=1) ² WorkflowArchive/ListWorkflows_with_label_selector-12 192.71m ± ∞ ¹ 25.87m ± ∞ ¹ ~ (p=1.000 n=1) ² WorkflowArchive/CountWorkflows-12 13.04m ± ∞ ¹ 11.75m ± ∞ ¹ ~ (p=1.000 n=1) ² geomean 77.31m 19.58m -74.68% ¹ need >= 6 samples for confidence interval at level 0.95 ² need >= 4 samples to detect a difference at alpha level 0.05 │ postgres_before_10000_workflows3.txt │ postgres_after_10000_workflows2.txt │ │ B/op │ B/op vs base │ WorkflowArchive/ListWorkflows-12 497.2Ki ± ∞ ¹ 497.5Ki ± ∞ ¹ ~ (p=1.000 n=1) ² WorkflowArchive/ListWorkflows_with_label_selector-12 503.1Ki ± ∞ ¹ 503.9Ki ± ∞ ¹ ~ (p=1.000 n=1) ² WorkflowArchive/CountWorkflows-12 8.972Ki ± ∞ ¹ 8.899Ki ± ∞ ¹ ~ (p=1.000 n=1) ² geomean 130.9Ki 130.7Ki -0.20% ¹ need >= 6 samples for confidence interval at level 0.95 ² need >= 4 samples to detect a difference at alpha level 0.05 │ postgres_before_10000_workflows3.txt │ postgres_after_10000_workflows2.txt │ │ allocs/op │ allocs/op vs base │ WorkflowArchive/ListWorkflows-12 8.373k ± ∞ ¹ 8.370k ± ∞ ¹ ~ (p=1.000 n=1) ² WorkflowArchive/ListWorkflows_with_label_selector-12 8.410k ± ∞ ¹ 8.406k ± ∞ ¹ ~ (p=1.000 n=1) ² WorkflowArchive/CountWorkflows-12 212.0 ± ∞ ¹ 212.0 ± ∞ ¹ ~ (p=1.000 n=1) ³ geomean 2.462k 2.462k -0.03% ¹ need >= 6 samples for confidence interval at level 0.95 ² need >= 4 samples to detect a difference at alpha level 0.05 ³ all samples are equal ``` Signed-off-by: Mason Malone <651224+MasonM@users.noreply.github.com>
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"fix(controller): Updates such and such. Fixes #1234".