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seanet function now takes bait #446

seanet function now takes bait

seanet function now takes bait #446

name: Python Package using Conda
on: [push]
jobs:
build-linux:
runs-on: ubuntu-latest
strategy:
max-parallel: 5
steps:
- uses: actions/checkout@v3.3.0
- name: Set up Python 3.11
uses: actions/setup-python@v4.5.0
with:
python-version: 3.11
- name: Add conda to system path
run: |
# $CONDA is an environment variable pointing to the root of the miniconda directory
echo $CONDA/bin >> $GITHUB_PATH
dir $CONDA
dir $CONDA/etc
- name: Clean dependencies (pip)
run: |
# Clear cache to ensure new versions are properly integrated
pip cache purge
- name: Clean dependencies (conda)
run: |
# Clear out the env file (if it exists)
conda env remove --name ew
- name: Install dependencies
run: |
conda env update --file ew_env.yml --name ew
- name: Lint with flake8
run: |
source $CONDA/etc/profile.d/conda.sh
conda activate ew
conda install flake8
# stop the build if there are Python syntax errors or undefined names
flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics
# exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
- name: Test with pytest
run: |
source $CONDA/etc/profile.d/conda.sh
conda activate ew
pip install pytest
pip install pytest-cov
pytest --cov=ew