Add action for release

.github/ISSUE_TEMPLATE/bug.yml

@@ -0,0 +1,13 @@
+name: Bug
+description: Let us know about an unexpected error, a crash, or an incorrect behavior.
+labels:
+  - 'bug'
+body:
+  - type: textarea
+    id: problem
+    attributes:
+      label: Problem
+    validations:
+      required: true
+
+

.github/ISSUE_TEMPLATE/config.yml

@@ -0,0 +1 @@
+blank_issues_enabled: false

.github/ISSUE_TEMPLATE/feature.yml

@@ -0,0 +1,18 @@
+name: Feature
+description: Suggest a new feature.
+labels:
+  - 'enhancement'
+body:
+  - type: textarea
+    id: use-cases
+    attributes:
+      label: Use Cases
+    validations:
+      required: true
+
+  - type: textarea
+    id: attempted-solutions
+    attributes:
+      label: Attempted Solutions
+    validations:
+      required: false

.github/workflows/seqslab_connector_release.yml

@@ -0,0 +1,137 @@
+name: seqslab connector release
+on:
+  workflow_dispatch:
+    inputs:
+      User:
+        description: 'Pypi User'
+        required: true
+        default: '__token__'
+      Password:
+        description: 'Pypi  Password'
+        required: true
+        default: ''
+
+jobs:
+  test-tags:
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@master
+      - name: Setup Python
+        uses: actions/setup-python@v4
+        with:
+          python-version: 3.8
+
+      - name: Get versioning information
+        id: versions
+        run: |
+          CURRENT_TAG=${GITHUB_REF#refs/tags/}
+          CURRENT_VERSION=$(cat seqslab/__init__.py | grep "__version__"| awk '{print $3}' | sed 's/^"//'| sed 's/"$//' )
+
+          # set output
+          echo "CURRENT_VERSION=$CURRENT_VERSION" >> $GITHUB_OUTPUT
+
+      - name: Print versioning information
+        run: |
+          echo "Print CURRENT_VERSION"
+          echo ${{ steps.versions.outputs.CURRENT_VERSION }}
+
+      - uses: mukunku/tag-exists-action@v1.2.0
+        id: checkTag
+        with:
+          tag: "${{ steps.versions.outputs.CURRENT_VERSION }}"
+        env:
+          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+
+      - name: Verify tag is documented
+        run: |
+          if ${{ steps.checkTag.outputs.exists }}; then
+            echo "========================================================================"
+            echo "Error: ${{ steps.versions.outputs.CURRENT_VERSION }} exists";
+            echo "========================================================================"
+            exit 1;
+          else
+            echo "${{ steps.versions.outputs.CURRENT_VERSION }} does not exist"
+          fi      
+
+
+  deploy:
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@master
+      - name: Setup Python
+        uses: actions/setup-python@v4
+        with:
+          python-version: 3.8
+
+      - name: Get Current Timestamp
+        if: success()
+        id: date
+        run: echo "NOW=$(date +'%Y-%m-%d-%H-%M')">> $GITHUB_OUTPUT
+
+      - name: Get versioning information
+        id: versions
+        run: |
+          CURRENT_TAG=${GITHUB_REF#refs/tags/}
+          CURRENT_VERSION=$(cat seqslab/__init__.py | grep "__version__"| awk '{print $3}' | sed 's/^"//'| sed 's/"$//' )
+
+          # set output
+          echo "CURRENT_VERSION=$CURRENT_VERSION" >> $GITHUB_OUTPUT
+
+      - name: Print versioning information
+        run: |
+          # set output
+          echo "Print Datetime"
+          echo ${{ steps.date.outputs.NOW }}
+          echo "Print CURRENT_VERSION"
+          echo ${{ steps.versions.outputs.CURRENT_VERSION }}
+
+      # Publish Release
+      - name: Create Seqslab Connector Release
+        if: (github.ref == 'refs/heads/main') && success()
+        id: create_release
+        uses: actions/create-release@v1
+        with:
+          tag_name: ${{ steps.versions.outputs.CURRENT_VERSION }}
+          release_name: ${{ steps.versions.outputs.CURRENT_VERSION }}
+          body: |
+            TimeStamp
+            - timestamp = ${{ steps.date.outputs.NOW }}
+          draft: false
+          prerelease: false
+        env:
+          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} # This token is provided by Actions, you do not need to create your own token
+
+      - name: Install Python dependencies
+        run: |
+          python -m pip install --upgrade pip
+          pip install wheel twine
+
+      - name: Build dist
+        run: python setup.py sdist bdist_wheel --python-tag py3
+
+      - name: Archive dist
+        uses: actions/upload-artifact@v3
+        with:
+          name: dist
+          path: |
+            dist/*.tar.gz
+            dist/*.whl
+
+      - name: Verify long description rendering
+        run: twine check dist/*
+
+      - name: Publish distribution 📦 to PyPI
+        id: deploy
+        env:
+          PYPI_API_USER: ${{ github.event.inputs.User }}
+          PYPI_API_TOKEN: ${{ github.event.inputs.Password }}
+        run: |
+          twine upload --non-interactive -u "${PYPI_API_USER}" -p "${PYPI_API_TOKEN}" dist/*
+
+      # delete release if deploy fail
+      - uses: dev-drprasad/delete-tag-and-release@v1.0 # PRERELEASE is v1.0 and can also be used to test and give us feedback
+        if: steps.deploy.outputs.exit_code != 0
+        with:
+          tag_name: ${{ steps.versions.outputs.CURRENT_VERSION }} #(required) tag name to delete
+          github_token: ${{ secrets.GITHUB_TOKEN }} # (required) a GitHub token with write access to the repo that needs to be modified
+          delete_release: true

setup.cfg

@@ -0,0 +1,11 @@
+[bdist_wheel]
+universal = 1
+[flake8]
+max-line-length = 119
+# Ignore some well known paths
+exclude = .venv,.tox,dist,doc,build,*.egg,db/env.py,db/versions/*.py,site
+[metadata]
+license_file = LICENSE
+project_urls =
+    Documentation = https://docs.atgenomix.com/
+    Repository = https://github.com/atgenomix/seqslab-connector

setup.py

@@ -1,17 +1,43 @@
 #!/usr/bin/env python3
 
+import os
+from typing import Union, Any
+
 from setuptools import setup
+
 import seqslab
 
+setup_file_loc: Union[Union[str, bytes], Any] = os.path.abspath(
+    os.path.dirname(__file__))
+# allow setup.py to be run from any path
+os.chdir(setup_file_loc)
+
+extras_require = {
+}
+
+
+def get_requirement():
+    requirements = [  # dependency list
+        'pip>=22.0.4'
+    ]
+    with open(os.path.join(setup_file_loc, 'requirements.txt'), 'r') as f:
+        ori_req = f.read().splitlines()
+    requirements.extend(ori_req)
+    return requirements
+
+
+def readme():
+    path = os.path.join(setup_file_loc, 'README.md')
+    with open(path, "r", encoding="utf-8") as fh:
+        return fh.read()
 
-with open('README.md') as readme:
-    long_description = readme.read()
 
 setup(
     name="seqslab-connector",
     version=seqslab.__version__,
     description="Atgenomix SeqsLab Connector for Python",
-    long_description=long_description,
+    long_description=readme(),
+    long_description_content_type="text/markdown",
     url="https://github.com/atgenomix/seqslab-connector",
     author="Allen Chang",
     author_email="allen.chang@atgenomix.com",
@@ -22,11 +48,15 @@
         "License :: OSI Approved :: Apache Software License",
         "Operating System :: OS Independent",
         "Topic :: Database :: Front-Ends",
+        'Programming Language :: Python :: 3',
+        'Programming Language :: Python :: 3.7',
+        'Programming Language :: Python :: 3.8',
+        'Programming Language :: Python :: 3.9',
+        'Programming Language :: Python :: 3.10',
+        'Programming Language :: Python :: 3.11',
     ],
-    install_requires=[
-        "pyhive",
-        "thrift",
-    ],
+    data_files=[('requirements', ['requirements.txt'])],
+    install_requires=get_requirement(),
     extras_require={
         "sqlalchemy": ["sqlalchemy>=1.3.0"],
         "superset": ["superset>=2.0.1"],