The R code to accompany the manuscript "Two ion-selective pore forming effectors delivered by the same Type VI secretion system have distinct consequences for targeted bacterial cells" by Mark Reglinski, Quenton W Hurst, David Williams, Marek Gierlinski, Katharine Mathers, Adam Ostrowski, Megan Bergkessel, Ulrich Zachariae, Samantha J Pitt and Sarah J Coulthurst.
The R code in this repository uses renv and targets for reproducibility. renv is used to reproduce the R environment:
install.packages("renv")
renv::restore()
Next, the targets pipeline is invoked with the following command:
targets::tar_make()
Finally, the HTML report, including all figures, can be created with:
quarto::quarto_render("doc/report.qmd")
The HTML file will be created in folder doc.