PT_HiFi_rhizobial_assemblies: HiFi Rhizobial Microbiome Analysis

Overview

This repository contains scripts and data for analysing the rhizobial microbiome using high-fidelity (HiFi) sequencing technologies. The project aims to investigate the diversity and function of rhizobia in various soil samples to understand their role in plant growth and soil health.

Table of Contents

• Introduction
• Requirements
• Installation
• Usage
• License

Introduction

This project uses HiFi sequencing technology to provide analysis of isolated rhizobial isolates from soil environments.

Requirements

• Python 3.8 or higher. Biopython, matplotlib, pandas, seaborn
• snakmake
• Conda envs can be found in the envs folder, which are used for the snakemake method

Installation

1. Clone the repository:

   git clone https://github.com/bartongroup/PT_HiFi_rhizobial_assemblies.git  
   cd PT_HiFi_rhizobial_assemblies

Usage

snakemake --snakefile <name_of_file_to_run>

License

This project is licensed under the MIT License. See the LICENSE file for details.