Merge pull request #7 from shaneknapp/install-bwa

adding seqtk and bwa
berkeley-dsep-infra · Sep 30, 2024 · a81b11c · a81b11c
2 parents c6aa372 + ed13ac8
commit a81b11c
Showing 1 changed file with 2 additions and 1 deletion.
diff --git a/environment.yml b/environment.yml
@@ -13,7 +13,7 @@ dependencies:
 - jupyter-rsession-proxy==2.0.1
 
 # Packages from bioconda for IB134L
-# - bwa=0.7.12
+- bwa=0.7.18
 - samtools=1.3.1
 - mafft=7.471
 - emboss=6.6.0
@@ -22,6 +22,7 @@ dependencies:
 - structure=2.3.4
 - paml=4.9
 #- repeatmasker=4.0.9
+- seqtk
 - trimmomatic=0.39
 - blast=2.12.0
 - fastqc=0.11.9