fixed database tabs

bgruening · Dec 16, 2024 · 2dfa011 · 2dfa011
1 parent da2821f
commit 2dfa011
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Showing 3 changed files with 3 additions and 3 deletions.
diff --git a/tools/sylph/macros.xml b/tools/sylph/macros.xml
@@ -127,7 +127,7 @@
             <when value="cached">
                 <param label="Select a sylph database" name="sylph_database" type="select">
                     <options from_data_table="sylph_databases">
-                        <filter type="sort_by" column="3"/>
+                        <!-- <filter type="sort_by" column="3"/> -->
                         <validator message="No Sylph databases are available" type="no_options" />
                     </options>
                 </param>

diff --git a/tools/sylph/sylph_profile.xml b/tools/sylph/sylph_profile.xml
@@ -44,7 +44,7 @@
             --min-number-kmers ${min_num_kmers}
         #end if
         -t \${GALAXY_SLOTS:-4}
-        -o $output
+        -o '$output'
 
         #if $outputs:
             #if $database_select.select == 'cached':

diff --git a/tools/sylph/test-data/sylph_databases.loc b/tools/sylph/test-data/sylph_databases.loc
@@ -1 +1 @@
-sylph_db	sylph_db	${__HERE__}/sylph_db	   version_string
+sylph_db	sylph_db	${__HERE__}/sylph_db	version_string
Original file line number	Diff line number	Diff line change
		@@ -1 +1 @@
		sylph_db sylph_db ${__HERE__}/sylph_db version_string
		sylph_db sylph_db ${__HERE__}/sylph_db version_string