deprecate augustus (#1559)

now at IUC
bgruening · Dec 14, 2024 · 373c81f · 373c81f
1 parent 6d08a14
commit 373c81f
Show file tree

Hide file tree

Showing 12 changed files with 0 additions and 0 deletions.
diff --git a/tools/augustus/.shed.yml → deprecated/tools/augustus/.shed.yml b/tools/augustus/.shed.yml → deprecated/tools/augustus/.shed.yml
diff --git a/tools/augustus/augustus.xml → deprecated/tools/augustus/augustus.xml b/tools/augustus/augustus.xml → deprecated/tools/augustus/augustus.xml
diff --git a/tools/augustus/extract_features.py → ...ecated/tools/augustus/extract_features.py b/tools/augustus/extract_features.py → ...ecated/tools/augustus/extract_features.py
diff --git a/tools/augustus/readme.rst → deprecated/tools/augustus/readme.rst b/tools/augustus/readme.rst → deprecated/tools/augustus/readme.rst
diff --git a/...ugustus/test-data/arabidopsis_augustus.fa → ...ugustus/test-data/arabidopsis_augustus.fa b/...ugustus/test-data/arabidopsis_augustus.fa → ...ugustus/test-data/arabidopsis_augustus.fa
diff --git a/tools/augustus/test-data/human_augustus.fa → ...ools/augustus/test-data/human_augustus.fa b/tools/augustus/test-data/human_augustus.fa → ...ools/augustus/test-data/human_augustus.fa
diff --git a/...ein_codingseq_introns_cds_codingseq.fasta → ...ein_codingseq_introns_cds_codingseq.fasta b/...ein_codingseq_introns_cds_codingseq.fasta → ...ein_codingseq_introns_cds_codingseq.fasta
diff --git a/...us_protein_codingseq_introns_cds_main.gtf → ...us_protein_codingseq_introns_cds_main.gtf b/...us_protein_codingseq_introns_cds_main.gtf → ...us_protein_codingseq_introns_cds_main.gtf
diff --git a/...otein_codingseq_introns_cds_protein.fasta → ...otein_codingseq_introns_cds_protein.fasta b/...otein_codingseq_introns_cds_protein.fasta → ...otein_codingseq_introns_cds_protein.fasta
diff --git a/...ustus/test-data/human_augustus_utr-on.gff → ...ustus/test-data/human_augustus_utr-on.gff b/...ustus/test-data/human_augustus_utr-on.gff → ...ustus/test-data/human_augustus_utr-on.gff
diff --git a/...ustus/test-data/human_augustus_utr-on.gtf → ...ustus/test-data/human_augustus_utr-on.gtf b/...ustus/test-data/human_augustus_utr-on.gtf → ...ustus/test-data/human_augustus_utr-on.gtf
diff --git a/tools/augustus/tool_dependencies.xml → ...ated/tools/augustus/tool_dependencies.xml b/tools/augustus/tool_dependencies.xml → ...ated/tools/augustus/tool_dependencies.xml