test latest image #6

	---
	name: test latest image

	on:
	pull_request:
	branches: ['*']
	schedule:
	- cron: 0 0 1 * *
	workflow_dispatch:

	concurrency:
	group: ${{ github.workflow }}-${{ github.ref }}
	cancel-in-progress: true

	defaults:
	run:
	shell: bash -l {0}

	jobs:

	test_latest_image:

	runs-on: ubuntu-latest

	steps:
	- name: Install dependencies
	run: \|
	sudo apt-get update
	sudo apt-get install -y tree

	- name: Clone repo
	uses: actions/checkout@v3

	- name: pull docker image
	run: docker pull bids/mindboggle:latest

	- name: print version
	run: \|
	docker run -t --rm \
	bids/mindboggle:latest -v
	docker run -t --rm \
	bids/mindboggle:latest -h

	- name: get data
	run: \|
	wget https://raw.githubusercontent.com/bids-apps/maintenance-tools/main/utils/get_data_from_osf.sh
	bash get_data_from_osf.sh ds114_test1

	- name: prepare output dir
	run: mkdir -p ${HOME}/outputs

	- name: participant level test
	run: \|
	docker run -t --rm \
	-v ${HOME}/data/ds114_test1:/home/jovyan/work/bids_dataset \
	-v ${HOME}/outputs1:/home/jovyan/work/outputs \
	bids/mindboggle \
	/home/jovyan/work/bids_dataset \
	/home/jovyan/work/outputs \
	participant \
	--participant_label 01


	- name: check output
	run: tree ${HOME}/data/ds114_test1_with_freesurfer/derivatives

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