New dataset "dwi_deriv" for scanner-generated DWI derivatives #1105
Workflow file for this run
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| name: validate_datasets | |
| on: | |
| push: | |
| branches: ['**'] | |
| pull_request: | |
| branches: ['**'] | |
| create: | |
| branches: [master] | |
| tags: ['**'] | |
| schedule: | |
| - cron: "0 4 * * 1" | |
| concurrency: | |
| group: ${{ github.ref }} | |
| cancel-in-progress: true | |
| jobs: | |
| build: | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| platform: [ubuntu-latest, macos-latest, windows-latest] | |
| bids-validator: [master, stable, master-deno] | |
| runs-on: ${{ matrix.platform }} | |
| env: | |
| TZ: Europe/Berlin | |
| FORCE_COLOR: 1 | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Node.js | |
| if: "matrix.bids-validator == 'stable' || matrix.bids-validator == 'master'" | |
| uses: actions/setup-node@v4 | |
| with: | |
| node-version: 18 | |
| - name: Install BIDS validator (stable) | |
| if: "matrix.bids-validator == 'stable'" | |
| run: | | |
| npm install -g bids-validator | |
| - name: Install BIDS validator (master) | |
| if: "matrix.bids-validator == 'master'" | |
| run: | | |
| pushd .. | |
| # Get npm 7+ | |
| npm install -g npm | |
| git clone --depth 1 https://github.com/bids-standard/bids-validator | |
| cd bids-validator | |
| # Generate the full development node_modules | |
| npm clean-install | |
| # Build & bundle the bids-validator CLI package | |
| npm -w bids-validator run build | |
| # Generate a package to install globally | |
| npm -w bids-validator pack | |
| # Install the package globally | |
| bash -c "npm install -g bids-validator-*.tgz" | |
| popd | |
| - uses: denoland/setup-deno@v1 | |
| if: "matrix.bids-validator == 'master-deno'" | |
| with: | |
| deno-version: v1.x | |
| - name: Install BIDS validator (master deno build) | |
| if: "matrix.bids-validator == 'master-deno'" | |
| run: | | |
| # If unmerged validator PRs are needed for testing, you can use | |
| # https://github.com/<FORK>/bids-validator/raw/<BRANCH>/bids-validator/src/bids-validator.ts | |
| deno install -Agf https://github.com/bids-standard/bids-validator/raw/deno-build/bids-validator.js | |
| shell: bash | |
| - name: Display versions and environment information | |
| run: | | |
| echo $TZ | |
| date | |
| echo "npm"; npm --version | |
| echo "node"; node --version | |
| echo "bids-validator"; bids-validator --version | |
| shell: bash | |
| - name: Check that no large files are present | |
| if: "matrix.bids-validator == 'stable'" | |
| run: | | |
| echo "Checking for big files ..." | |
| found=`find . -not -path "./.git*" -type f -size +500k` | |
| if [ "$found" == "" ] | |
| then | |
| echo "No big files present, great!" | |
| else | |
| echo "Found big files:" | |
| echo "$found" | |
| exit 1; | |
| fi | |
| shell: bash | |
| - name: Skip MRS validation for legacy validator | |
| run: for DS in mrs_* dwi_deriv; do touch $DS/.SKIP_VALIDATION; done | |
| if: "matrix.bids-validator != 'master-deno'" | |
| shell: bash | |
| - name: Validate all BIDS datasets using bids-validator | |
| run: | | |
| cat ./run_tests.sh | |
| ./run_tests.sh | |
| shell: bash | |
| env: | |
| # When proposing new features, schema changes may be necessary. | |
| # Update this URL to the schema.json from PRs to the spec, when needed. | |
| BIDS_SCHEMA: https://bids-specification--1864.org.readthedocs.build/en/1864/schema.json |